DN617867

Overview
NameDN617867
Unique NameDN617867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig516 contig Csv1_Contig516:81..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617867 vs. ExPASy Swiss-Prot
Match: GLO2_METS4 (Hydroxyacylglutathione hydrolase OS=Methylobacterium sp. (strain 4-46) GN=gloB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 3 
Query:  213 VENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVSPSN 518
            V  GD   +G+ V  +   TP H   H++Y+       +   F GDTLF  GCG+  E   E +++SL   L +LP  T +Y GH+Y + N  FAL   P N
Sbjct:   92 VREGDAVRLGSLVAAV-WETPGHCADHVTYWFE----RERIAFAGDTLFTLGCGRVMESPPEVLWRSLSRFL-ALPDETAIYSGHDYVLSNARFALAADPDN 187
[Close]
BLAST of DN617867 vs. ExPASy Swiss-Prot
Match: GLO2_BDEBA (Hydroxyacylglutathione hydrolase OS=Bdellovibrio bacteriovorus GN=gloB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 3 
Query:  213 VENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLF 494
            ++ GD  + G   +   +  P HT GHI+Y+      +   +F+GD +F  GCG+ FEG+ EQ Y+SL   +  LP  T +YC HEYT  NL F
Sbjct:   95 LKEGDSVTCGPW-DFTVMELPGHTLGHIAYW----NQKHKWLFSGDVIFGLGCGRLFEGTFEQGYESL-QRIKKLPPQTLIYCTHEYTKSNLEF 182
The following BLAST results are available for this feature:
BLAST of DN617867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
GLO2_METS46.075e-1136.27Hydroxyacylglutathione hydrolase OS=Methylobacteri... [more]
GLO2_BDEBA7.935e-1139.36Hydroxyacylglutathione hydrolase OS=Bdellovibrio b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617867 ID=DN617867; Name=DN617867; organism=Citrus sinensis; type=EST; length=526bp
AGACCACTCAAAGAAGCTCGCGGTTGTTGATCCAGTGGAGCCAGAGAAGA
TCATTGAGGCTGCCAAACAACATGGTGTCAATCTCACCACCGTTCTCACT
ACTCATCATCACTGGGACCATGCTGGNAGGGAACGAAAAGATGAAGGAGA
TGGTGCCTGGGATTAAGGTGTATGGTGGCTCACTTGATAATGTAAAGGGG
TGCACTCATCAAGTGGAAAATGGTGATAAGTTCTCAATTGGAGCTCATGT
CAATGTACTGTCTCTTCACACACCTTGCCATACCAAAGGTCACATAAGTT
ATTATGTGACTGGAAAAGAGGGAGAAGACCCAGCTGTTTTCACTGGAGAC
ACACTGTTTGTTGCTGGTTGTGGAAAATTTTTTGAAGGCTCGGCAGAACA
GATGTATCAATCCCTGTGCGTGACATTGGGCTCATTACCTCAGCCAACTC
AAGTTTACTGTGGCCATGAGTACACAGTGAAGAACCTACTATTTGCTCTT
ACTGTCTCACCAAGCAATGTGAAGCT
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