DN617853

Overview
NameDN617853
Unique NameDN617853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:907..1522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 36/116 (31.03%), Postives = 59/116 (50.86%), Query Frame = -1
Query:  288 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGV----------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 584
            E  + H + +  P++V   +    + Y+ GV  +T     P  V+H+V+ VG+G + +G+                PYW++KNSWG +WG+ GYF++  G N CG+     YP  A
Sbjct:  245 EQAIAHYLAVHGPITVTINM-KLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV---TKYPFTA 356          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = -1
Query:  294 RPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 551
            +PVSV  E     F+ YK G++  + CG     V+HAV AVGYG   G  Y LIKNSWG  WG++GY ++         +CG+   + YP+
Sbjct:  260 QPVSVVVESAGRDFQNYKGGIFEGS-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 346          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = -1
Query:  318 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 548
            P+     V     +Y+SGVY  T  G   +   HA+  VGYG  +DG  YW+IKNSWG +WG++GYF++  G N C I
Sbjct:  218 PLQTMIVVYADLSYYESGVYKHTY-GTINLGF-HALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRI 293          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = -1
Query:  303 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 584
            EDE+  A+    P+ V  + V  ++ Y  G+     C +   + NHAV+  G+      PYW+++NSWG +WG  GY  ++MG N+CGIA   S
Sbjct:  228 EDEMAKALLTFGPLVVIVDAVS-WQDYLGGIIQH-HCSSG--EANHAVLITGFDKTGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCGIADSVS 317          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = -1
Query:  276 EDELQHAVGLV--RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA*SAP 584
            +DE Q A  L    PV+VA +    +  Y  GV +S  C +  +D  H V+ VGY     VPYW+IKNSW   WG+ GY ++  G N C +   AS  VV    P
Sbjct:  242 QDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGGVMTS--CVSEQLD--HGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVGGPGP 341          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = -1
Query:  288 RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV------------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 512
            + YK GV  +T     P  V+H+V+ VG+G  + V                  P+W++KNSWG  WG  GYF++  G N CGI     YP+ A
Sbjct:  270 KLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI---TKYPLTA 359          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = -1
Query:  303 VNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 455
            +NH V+ VGYG     P       YW+IKNSWGENWG++GY+K+  G+N+CG+ +  S
Sbjct:   29 LNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVS 86          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -1
Query:  315 GAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIA 590
            G EDE+  A+    P+ V  + +  ++ Y  G+     C +   + NHAV+  G+      PYW+++NSWG +WG  GY  ++MG N+CGIA
Sbjct:  217 GQEDEMARALLSFGPLVVIVDAMS-WQDYLGGIIQH-HCSSG--EANHAVLITGFDRTGNTPYWMVRNSWGSSWGVEGYAHVKMGGNVCGIA 304          
The following BLAST results are available for this feature:
BLAST of DN617853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATW_MOUSE2.259e-1131.03Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
PAPA4_CARPA2.951e-1140.66Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CATB1_GIALA3.854e-1143.59Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
CATO_HUMAN5.033e-1136.17Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
CYSP_TRYCR6.573e-1139.05Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CATW_FELCA6.573e-1135.48Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
PAPA5_CARPA8.585e-1148.28Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CATO_MOUSE8.585e-1135.87Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617853 ID=DN617853; Name=DN617853; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTCCATATAACAACTACCGTTGCATTGACAAAATATATAT
AACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATC
TCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTA
TATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTG
CTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCT
GATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGG
TATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTT
AAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCC
AATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGG
TTCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACT
CTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTC
GAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATG
TTGACTGAGTCCAGGAC
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