DN617853

Overview
NameDN617853
Unique NameDN617853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.108e-21
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  297 GAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 590
            G E  L+ AV  V P+SVA +  +  F+FY  GVY    C +   ++NHAV+AVGYG++ G  +W+IKNSWGENWG+ GY  M   K N CGIA  AS+P
Sbjct:  231 GNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENCNSD--NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 328          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  297 GAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 590
            G E  L+ AV  V PVSVA +  +  F+FY  GVY    C +   +VNHAV+AVGYG++ G  +W+IKNSWGE+WG+ GY  M   K N CGIA  AS+P
Sbjct:  230 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSD--NVNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLASFP 327          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = -1
Query:  291 VLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 617
            V D V I  G E+ L  AV  V P+SVA +   D F+FY SG+Y   +C    + +NHAV+ VGYG E    DG  YWL+KNSWGE WG  GY K+     N CGIAT A+YP+V
Sbjct:  222 VRDFVQIP-GREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKR--VHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGEEWGMKGYIKIAKDWNNHCGIATLATYPIV 333          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 52/107 (48.60%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  291 VNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM-EMGKNMCGIATCASYPVV 605
            + +  G ED L+ AV    PVSV  +     F FYKSGVY    C     +VNH V+ VGYG  DG  YWL+KNSWG N+GD GY +M    KN CGIA+  SYP +
Sbjct:  237 IQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTG---NVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASYCSYPEI 340          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  291 EDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 584
            E+ LQ AV  V P+SVA +     F+FY SGVY    C  T +D  H V+AVGYG E    YWL+KNSWG +WGD GY KM   + N CGIA+  SYP V
Sbjct:  224 EEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLD--HGVLAVGYGTESTKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIASEPSYPTV 321          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  291 VNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 605
            V+I  G E++++ AV  + PVSVA +   + F+ Y  GVY+  +C    +D  H V+ VGYG  E G+ YWL+KNSWG  WG+ GY KM   + N CGIAT +SYP V
Sbjct:  234 VDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLD--HGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQNNQCGIATASSYPTV 339          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = -1
Query:  291 VLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 617
            V D V I  G+E+ L  AV  V P+SVA +   G F+FY SG+Y   +C    + +NHAV+ VGYG E    DG  +WL+KNSWGE WG  GY K+     N CGIAT ++YP+V
Sbjct:  222 VRDFVQIP-GSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKR--VHLNHAVLVVGYGFEGEESDGNSFWLVKNSWGEEWGMKGYMKLAKDWSNHCGIATYSTYPIV 333          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  291 NITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 602
            +I  G E ++  AV  V PVSVA +   + F+FY  GVY+  +C    +D  H V+ VG+G  E G  YWL+KNSWG  WGD G+ KM   K N CGIA+ +SYP+V
Sbjct:  267 DIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLD--HGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV 371          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  297 ITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 599
            I +G E  L+ AV  V PVSV+ +  +  F+FY  GVY    C     +VNHAV+ VGYG + G  YW+IKNSWGE+WG+ GY  +   K N CGI   AS+P
Sbjct:  227 IPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRD--NVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARNKNNACGITNLASFP 327          
BLAST of DN617853 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  291 VNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 605
            V I  G+E  L+ A   + P+SVA +     F+ Y +GVY    C ++ +D  HAV+AVGYG E G  +WL+KNSW  +WG+ GY KM   + N CGIAT A YP V
Sbjct:  218 VGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLD--HAVLAVGYGSEGGQDFWLVKNSWATSWGESGYIKMARNRNNNCGIATDACYPTV 322          
The following BLAST results are available for this feature:
BLAST of DN617853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATK_CANFA4.108e-2150.00Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATK_RABIT5.365e-2151.00Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
TEST2_MOUSE7.007e-2149.57Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATS_MOUSE7.007e-2148.60Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CYSP3_HOMAM1.195e-2052.00Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATL_SARPE1.195e-2046.30Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
TEST2_RAT4.542e-2047.83Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATL_DROME1.321e-1946.73Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATK_RAT1.321e-1947.57Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CYSP1_HOMAM5.021e-1945.79Digestive cysteine proteinase 1 OS=Homarus america... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617853 ID=DN617853; Name=DN617853; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTCCATATAACAACTACCGTTGCATTGACAAAATATATAT
AACATCGGTTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATC
TCAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTA
TATGGACATTAATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTG
CTATCATTCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCT
GATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGG
TATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTT
AAAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCC
AATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGG
TTCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACT
CTTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTC
GAACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATG
TTGACTGAGTCCAGGAC
back to top