DN617849

Overview
NameDN617849
Unique NameDN617849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            DEIKAA+K  + G +KGIL YTED VVSTDF GD+ SSIFD+ A I+L+  FVKL++WYDNE+GYS RVVDLI +++
Sbjct:  261 DEIKAAVKEAANGPMKGILEYTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            D+IK  +KA ++G +KGIL YTED VVSTDFV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  262 DDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.282e-22
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = -3
Query:  336 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLI 554
            DEIKAA+K  + G +KGIL YTED VVS+DFVGD  SSIFDA A I+L+  FVKL++WYDNE+GYS RVVDLI
Sbjct:  261 DEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLI 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 2.981e-22
Identity = 50/76 (65.79%), Postives = 65/76 (85.53%), Query Frame = -3
Query:  324 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 551
            +I AAIKA +EG++KGILGYT+D+VVS+DF G + +S+FD KAGI+L+  FVKLVSWYDNE GYS +V+DLI+H S
Sbjct:  254 DICAAIKAAAEGEMKGILGYTDDEVVSSDFNGVALTSVFDVKAGISLNDHFVKLVSWYDNETGYSHKVLDLILHTS 329          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.085e-22
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = -3
Query:  345 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVV 554
            D+IK  +KA ++G LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVV
Sbjct:  165 DDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVV 234          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.085e-22
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = -3
Query:  327 IKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 548
            I  A+KA ++G L GIL YTED VVSTDF G+  SSIFDAKAGIAL+  FVKLV+WYDNE+GYS RVVDL+ +M
Sbjct:  362 ITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDLLRYM 435          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.085e-22
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            D+IK  +KA ++G +KGIL YTED VVSTDFV D  SSIFD  A I+L+  FVKLVSWYDNE+GYS RVVDLI +++
Sbjct:  262 DDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.641e-22
Identity = 44/78 (56.41%), Postives = 63/78 (80.77%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            ++IK  ++  +EG+ KGI+ YT++DVVSTDF+ D+ S +FDAKAGI LS  FVKL++WYDNEWGYS RV +L+ +++K
Sbjct:  254 EQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.932e-21
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = -3
Query:  324 DEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            +EIK  IK  S+  +LKGIL YT+D VVSTDF GDS SS FDA+ GI+L+  FVKLVSWYDNEWGYS RV DL+ +++
Sbjct:  255 EEIKETIKKASQTPELKGILNYTDDQVVSTDFTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.932e-21
Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = -3
Query:  327 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 551
            EIK A+K  +EG +KG +GYTE  VVS+DF+GD+ SS+FDA AGI+ +  FVKL+SWYDNE+GYS RV DL+++M
Sbjct:  257 EIKGAVKKAAEGPMKGYVGYTEYSVVSSDFIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
The following BLAST results are available for this feature:
BLAST of DN617849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
G3P_BRUMA1.338e-2264.94Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P1_CAEEL1.748e-2266.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_ONCVO2.282e-2269.86Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3PC_LEIME2.981e-2265.79Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MELGA5.085e-2272.86Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PT_MOUSE5.085e-2268.92Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P4_CAEEL5.085e-2264.94Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P2_AGABI6.641e-2256.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_PHARH1.932e-2164.10Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_ONCMY1.932e-2161.33Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617849 ID=DN617849; Name=DN617849; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGAAGAACCGGTCTTCGATACTAACTAGATGAAA
AATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAAC
ATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGC
ACAACCCTGCATGAACAGGTAAGGCTCTGGATAATGTCTTGGAAACAATT
TTATTTAAACTCAAACCCTCTACATAGAAACACAAACACCACATTTAGCA
CAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCA
CGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCAC
ACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAA
ATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTA
CTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAA
GATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTT
CATCAT
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