DN617849

Overview
NameDN617849
Unique NameDN617849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.702e-15
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  318 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 554
            ++I AA KA +EG+LKGIL Y +  +VS+D V D  SSIFD+     +  +  K+VSWYDNEWGYS R+VDL+  + K+
Sbjct:  261 EDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDNQ-AKVVSWYDNEWGYSNRLVDLVALVGKS 338          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_ESCHE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia hermannii GN=gap PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.529e-15
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = -3
Query:  387 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLV 554
            ++IK AIKA +EG++KG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  239 EDIKKAIKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.610e-15
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  339 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 554
            +E+  A+K  SEG LKGIL Y+E  +VS+D+ G   SSI DA   + +    VK+++WYDNEWGYS RV+DL
Sbjct:  257 EEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDL 328          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.610e-15
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  339 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 554
            +E+  A+K  SEG LKGIL Y+E  +VS+D+ G   SSI DA   + +    VK+++WYDNEWGYS RV+DL
Sbjct:  257 EEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDL 328          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  321 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKA----GIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 551
            ++ A +K  SE  L+G+L Y ++D+VS D + +  SSI+D++A     +   K+F K+VSWYDNEWGYS RVVDL+  +S+
Sbjct:  268 DLNAMLKKASESYLRGVLQYCDEDIVSADVIHNQYSSIYDSRATLQNNLPNEKRFFKVVSWYDNEWGYSNRVVDLLKFISQ 348          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = -3
Query:  387 EIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLV 551
            E+ AAIK  +EG+LKG+LGYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  240 EVCAAIKEAAEGELKGVLGYTEDDVVSTDFNGEKLTSVFDAKAGIALNDNFVKLV 294          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  318 DEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 554
            +EI + +KA ++ G + G+LGYT++ +VS DF  D  SS  D++    L  K  ++V+WYDNEWG+S R+VD    M+KT
Sbjct:  257 EEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTAAQMAKT 336          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            +++  A+K  +EG LKGILGY+E+ +VS D+ G+  SS  DA + + +    VK++SWYDNE GYS RVVDL  +++
Sbjct:  255 EDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIA 331          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = -3
Query:  387 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLV 554
            +EIK A+K  +EG +KG+LGY EDDVVSTDF G+  +S+FDAKAGIAL+  FVKLV
Sbjct:  239 EEIKKAMKDAAEGSMKGVLGYVEDDVVSTDFNGEVLTSVFDAKAGIALNDNFVKLV 294          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  318 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 554
            +EI A  +  +EG+LKGIL Y +  +VS+D V D  SSIFD+     ++ +  K+VSWYDNEWGYS R+VDL+  + K+
Sbjct:  261 NEINAVFQDAAEGRLKGILKYVDAPIVSSDIVTDPHSSIFDSGLTKVIASQ-AKVVSWYDNEWGYSNRLVDLVGLVGKS 338          
The following BLAST results are available for this feature:
BLAST of DN617849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
G3P_MYCAV2.702e-1550.63Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_ESCHE3.529e-1569.64Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_ANAVT4.610e-1551.39Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP4.610e-1551.39Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_TREPA7.863e-1545.68Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]
G3P_SEROD7.863e-1570.91Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ZYMMO2.288e-1443.75Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_BACME2.988e-1446.75Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_SERMA6.656e-1466.07Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MYCLE6.656e-1448.10Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617849 ID=DN617849; Name=DN617849; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGAAGAACCGGTCTTCGATACTAACTAGATGAAA
AATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAAC
ATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGC
ACAACCCTGCATGAACAGGTAAGGCTCTGGATAATGTCTTGGAAACAATT
TTATTTAAACTCAAACCCTCTACATAGAAACACAAACACCACATTTAGCA
CAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCA
CGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCAC
ACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAA
ATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTA
CTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAA
GATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTT
CATCAT
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