DN617849

Overview
NameDN617849
Unique NameDN617849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = -3
Query:  339 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 554
            +++ AA +  +EG LKGIL   +  +VS DF     S+  D+   + +    VK+V+WYDNEWGYS RVVDL
Sbjct:  343 EDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 414          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = -3
Query:  339 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 554
            +E+ AA +  + G +KG+L   +  +VS DF    +S+  DA   + +    VK+V+WYDNEWGYS RVVDL
Sbjct:  293 EEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 364          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = -3
Query:  339 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 554
            + I AAIK  + G+    L Y+E+ +VSTD V DS  SIFDA     +S   VK+VSWYDNEWGY+ +++ L
Sbjct:  256 ESINAAIKEAAVGEFGETLAYSEEPLVSTDIVHDSHGSIFDAGL-TKVSGNTVKVVSWYDNEWGYTCQLLRL 326          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S R++D  V ++
Sbjct:  258 EEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLDTAVALA 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            +E+   +KA +EG+LKGIL Y    +VS DF  +  SS FDA     ++   VK+ +WYDNEWG+S R++D  V ++
Sbjct:  258 EEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATL-TKVNGTLVKVSAWYDNEWGFSNRMLDTAVALA 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: E4PD_IDILO (D-erythrose-4-phosphate dehydrogenase OS=Idiomarina loihiensis GN=epd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            ++I   ++ +SE +L GIL YTE+ +VS DF  D  SSI D        K+ VKL+ W DNEWG++ R++D    M++
Sbjct:  260 EQINQVLREQSERQLAGILDYTEEPLVSIDFNHDPHSSIVDGTQTRVSHKRLVKLLCWCDNEWGFANRLLDTAKTMAE 337          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            +EI  AI A +  +LKGILG+T+   VS DF  +  SS F       +    V+++SWYDNEWG+S R+ D  V M K
Sbjct:  256 EEINEAIIAAASQQLKGILGFTDQPNVSIDFNHNPNSSTFHLDQTKVMEGTLVRVLSWYDNEWGFSNRMSDTAVAMGK 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=epd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            +++   +K  +EG   G++GYT + +VS DF  D RSSI D           VKL+ W DNEWG++ R++D  + M K +
Sbjct:  257 EQVNRVLKQATEGSFSGVVGYTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIKAR 336          
The following BLAST results are available for this feature:
BLAST of DN617849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
G3PB_PEA3.092e-1144.44Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE3.092e-1143.06Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_CORGL6.888e-1148.61Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3PP_RALEH6.888e-1142.86Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH6.888e-1142.86Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
E4PD_IDILO6.888e-1141.03D-erythrose-4-phosphate dehydrogenase OS=Idiomarin... [more]
G3P_XANFL8.996e-1143.59Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
E4PD_SHEPW8.996e-1137.50D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617849 ID=DN617849; Name=DN617849; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGAAGAACCGGTCTTCGATACTAACTAGATGAAA
AATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAAC
ATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGC
ACAACCCTGCATGAACAGGTAAGGCTCTGGATAATGTCTTGGAAACAATT
TTATTTAAACTCAAACCCTCTACATAGAAACACAAACACCACATTTAGCA
CAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCA
CGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCAC
ACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAA
ATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTA
CTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAA
GATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTT
CATCAT
back to top