DN617849

Overview
NameDN617849
Unique NameDN617849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:56..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.249e-28
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIK  +KA +EGKLKG+LGYTED VVS+DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H++K
Sbjct:  254 DEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.632e-28
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            D+IKAA+K  SEG L+G LGYTEDDVVS+DF+GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DL+ HM K
Sbjct:  252 DDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.131e-28
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            DEIKAAIK+ SE ++KGILGYTE  VVS+DF+GDS SSIFDA+AGIAL+  FVKLVSWYDNEWGYS+RV+DLI HM K +
Sbjct:  253 DEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.131e-28
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            D+IK A+K  SE +LKGILGYTEDD+VSTD  GD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  255 DQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.784e-28
Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIK A+K  SEG L GILGYTEDD+V+TD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  255 DEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.748e-28
Identity = 57/78 (73.08%), Postives = 70/78 (89.74%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIK A+KA ++G L GILGYTED++VSTD  GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+++K
Sbjct:  255 DEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.201e-28
Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            +EIK+ IKA SEGKLKG+LGYTED VVS+DF+GD RSSIFDA AGI L+  FVKL+SWYDNE+GYSTRVVDL+ H++K
Sbjct:  255 EEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.058e-27
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            D+IK  +KA SEG LKGILGYTED VVS+DF GDSRSSIFDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  254 DDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.058e-27
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIKAA+K  S+G LKGILGYTED VVSTDF+GD+ SSIFDA AGI L+K FVKL++WYDNEWGYS RVVDL+V  +K
Sbjct:  255 DEIKAAVKEASKGPLKGILGYTEDHVVSTDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.058e-27
Identity = 59/79 (74.68%), Postives = 70/79 (88.61%), Query Frame = -3
Query:  321 DEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            ++IK  IKA SE G+LKGILGYTEDD+VSTD +GD+ SSIFDAKAGIAL++ F+KLVSWYDNEWGYS RVVDLI ++SK
Sbjct:  256 EDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
The following BLAST results are available for this feature:
BLAST of DN617849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
G3P2_YEAST1.249e-2876.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_HOMAM1.632e-2875.64Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_PHYIN2.131e-2875.00Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_EMENI2.131e-2875.64Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_CURLU2.784e-2874.36Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_PHANO4.748e-2873.08Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_PICPA6.201e-2874.36Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_TRISI1.058e-2775.00Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_LENED1.058e-2774.36Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_ASPOR1.058e-2774.68Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617849 ID=DN617849; Name=DN617849; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGAAGAACCGGTCTTCGATACTAACTAGATGAAA
AATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAAC
ATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGC
ACAACCCTGCATGAACAGGTAAGGCTCTGGATAATGTCTTGGAAACAATT
TTATTTAAACTCAAACCCTCTACATAGAAACACAAACACCACATTTAGCA
CAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCA
CGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCAC
ACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAA
ATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTA
CTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAA
GATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTT
CATCAT
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