DN617849

Overview
NameDN617849
Unique NameDN617849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:56..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.900e-26
Identity = 53/77 (68.83%), Postives = 67/77 (87.01%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            DEIKAA+K  S+GKLK ++GYTED VVS+DF+GD+ S+IFDA AGI LS KFVK+V+WYDNE+GYS RVVDL+ H++
Sbjct:  253 DEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            D+IK  +KA ++G LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  254 DDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.206e-25
Identity = 56/79 (70.89%), Postives = 69/79 (87.34%), Query Frame = -3
Query:  321 DEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            ++IKA +KA SE  +LKGILGYT++DVVSTDF+GD+ SSIFDAKAGI L+  FVKL+SWYDNE+GYS RVVDLIV ++K
Sbjct:  255 EDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.206e-25
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEI A +K  SEG LKGILG+T++ VVSTDF G + SSIFD+KAGIA+SK FVKL++WYDNEWGYS RV DL+V+ +K
Sbjct:  255 DEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.206e-25
Identity = 53/77 (68.83%), Postives = 69/77 (89.61%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            DEIKAA+K  +EG LKG++GYTED VVS+DF+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ +++
Sbjct:  255 DEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.881e-25
Identity = 53/78 (67.95%), Postives = 68/78 (87.18%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            + IKAA+K  SEG+LKGILGYTED++VS+D  G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  255 ETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.881e-25
Identity = 51/78 (65.38%), Postives = 66/78 (84.62%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIKA +K  + G L GILGYTEDD+VS+D  G++ SSIFDAKAGI+L+K FVKL++WYDNEWGYS RV+DL+ +++K
Sbjct:  255 DEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.762e-25
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            ++IK A+K  ++G LKG+L YTEDDVVSTD  G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DLI H++K
Sbjct:  255 EQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.913e-25
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIK  IK  SEG L GIL YTED+VVS+D  G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI ++SK
Sbjct:  255 DEIKEVIKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.913e-25
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = -3
Query:  327 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 554
            DEIKA +   S+G +KGIL YTE++VVSTDFVGD+ SS+FDAKAGI L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  253 DEIKAKVLEASQGPMKGILDYTEEEVVSTDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
The following BLAST results are available for this feature:
BLAST of DN617849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
G3P1_KLULA9.900e-2668.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_CHICK1.689e-2570.00Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_YARLI2.206e-2570.89Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_SCHCO2.206e-2567.95Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_PICCI2.206e-2568.83Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PODAN2.881e-2567.95Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_CLAPU2.881e-2565.38Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_CRYPA3.762e-2567.95Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_NEUCR4.913e-2571.79Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_GLOMM4.913e-2569.74Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617849 ID=DN617849; Name=DN617849; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGAAGAACCGGTCTTCGATACTAACTAGATGAAA
AATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAAC
ATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGC
ACAACCCTGCATGAACAGGTAAGGCTCTGGATAATGTCTTGGAAACAATT
TTATTTAAACTCAAACCCTCTACATAGAAACACAAACACCACATTTAGCA
CAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCA
CGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCAC
ACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAA
ATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTA
CTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAA
GATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTT
CATCAT
back to top