DN617849

Overview
NameDN617849
Unique NameDN617849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:56..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIKAA+K    G LKGIL YTED +VSTDF G++ SSIFDA AGIAL+K FVKL++WYDNEWGYS RVVDLI  +++
Sbjct:  255 DEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = -3
Query:  330 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVH 554
            +EI  A++  + G+LKG+LGYT++ VVS+DFVG+  SSIFDAKAGIAL K FVKLVSWYDNEWGYS RVVDL++H
Sbjct:  260 EEICNAVREAANGELKGVLGYTDEQVVSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDLLLH 334          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            D+IK  +KA ++G LKGIL YTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  254 DDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = -3
Query:  324 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 554
            +EI  AIK  SEG LKG+LGYTED VVSTDF+G S SSIFD KAGI LS  FVKL+SWYDNE+GYST+VVDL+ H++
Sbjct:  255 EEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 54/78 (69.23%), Postives = 67/78 (85.90%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            +EIKA +K  SE +LKG++GYTED VVS+DF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  ++K
Sbjct:  253 EEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 54/78 (69.23%), Postives = 67/78 (85.90%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            +EIKA +K  SE +LKG++GYTED VVS+DF+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  ++K
Sbjct:  253 EEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 52/76 (68.42%), Postives = 66/76 (86.84%), Query Frame = -3
Query:  327 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 554
            DEIKA ++  S+G LKGILGYT+++VVSTDF  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  253 DEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 8.381e-25
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            DEIK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  243 DEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 8.381e-25
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            DEIK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  254 DEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.381e-25
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = -3
Query:  327 IKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 548
            IK AIKA ++G + GIL YTED+VVSTDFVGDS SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  331 IKEAIKAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
The following BLAST results are available for this feature:
BLAST of DN617849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
G3P_OMPOL6.417e-2569.23Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_MASBA6.417e-2569.33Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P_COLLI6.417e-2568.75Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_CANAL6.417e-2571.43Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P3_KLUMA6.417e-2569.23Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA6.417e-2569.23Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_DROME6.417e-2568.42Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_SHEEP8.381e-2568.75Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BOVIN8.381e-2568.75Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3PT_MACFA8.381e-2574.32Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617849 ID=DN617849; Name=DN617849; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGAAGAACCGGTCTTCGATACTAACTAGATGAAA
AATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAAC
ATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGC
ACAACCCTGCATGAACAGGTAAGGCTCTGGATAATGTCTTGGAAACAATT
TTATTTAAACTCAAACCCTCTACATAGAAACACAAACACCACATTTAGCA
CAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCA
CGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCAC
ACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAA
ATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTA
CTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAA
GATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTT
CATCAT
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