DN617849

Overview
NameDN617849
Unique NameDN617849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:56..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            DEIK  +KA ++G +KGILGYTE  VVSTDF GD RSSIFDA AGIAL+  FVKLV+WYDNE+GYS RV DL+ HM+  +
Sbjct:  254 DEIKKVVKAAADGPMKGILGYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = -3
Query:  327 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 554
            DEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  253 DEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = -3
Query:  327 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 554
            DEIKA ++  + G LKGILGYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  253 DEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.430e-24
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            DEIK  +K  SEG L GIL YTED+VVS+D  G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI +++K
Sbjct:  255 DEIKEVVKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.867e-24
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            D+IK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  254 DDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 1.867e-24
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            D+IK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHM+  +
Sbjct:  254 DDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.867e-24
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            ++IKA +KA ++  +KGI+ YTED VVSTDF+ D  S IFDA AGI L+ KF KLV+WYDNEWGYS RVVDLI H+SK Q
Sbjct:  256 EDIKATMKAAADDSMKGIMKYTEDAVVSTDFIHDDASCIFDASAGIMLNSKFCKLVAWYDNEWGYSNRVVDLIAHISKVQ 335          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.185e-24
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = -3
Query:  321 DEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            +EIK  +KA SE  K K  +GYTED+VVSTDF+GD+ SSIFDA AGIAL+  FVKLVSWYDNE GYSTRV+DL+V++SK
Sbjct:  255 EEIKKVMKAASESDKYKRYIGYTEDEVVSTDFIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYISK 333          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.160e-24
Identity = 50/78 (64.10%), Postives = 66/78 (84.62%), Query Frame = -3
Query:  321 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 554
            +EI +AIK  ++G+LKGI+ YT D+VVSTD +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H++K
Sbjct:  255 EEITSAIKKAADGELKGIMAYTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of DN617849 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 5.432e-24
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = -3
Query:  315 DEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 554
            D+IK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HM+  +
Sbjct:  254 DDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333          
The following BLAST results are available for this feature:
BLAST of DN617849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
G3P_DANRE1.095e-2467.50Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P2_DROPS1.095e-2467.11Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME1.095e-2467.11Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_SORMA1.430e-2469.23Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_SPECI1.867e-2467.50Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_PIG1.867e-2467.50Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3PC_CHOCR1.867e-2465.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_DICDI3.185e-2469.62Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_TRIAT4.160e-2464.10Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_FELCA5.432e-2466.25Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617849 ID=DN617849; Name=DN617849; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTGAAGAACCGGTCTTCGATACTAACTAGATGAAA
AATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAAC
ATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGC
ACAACCCTGCATGAACAGGTAAGGCTCTGGATAATGTCTTGGAAACAATT
TTATTTAAACTCAAACCCTCTACATAGAAACACAAACACCACATTTAGCA
CAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCA
CGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCAC
ACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAA
ATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTTGACCTA
CTGTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAA
GATACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTT
CATCAT
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