DN617842

Overview
NameDN617842
Unique NameDN617842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617842_ssr136 microsatellite DN617842_ssr136:136..147. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:19..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL1_STRCO (Transaldolase 1 OS=Streptomyces coelicolor GN=tal1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  332 EGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            +G S W D+L R   +   L  LI +  V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A  +   +YD + G DG VS+EV PRLA DT  TV  A+
Sbjct:   20 QGVSVWLDDLSRRRIESGNLAELIRTKNVVGVTTNPSIFQAAIGSGEGYEEQLADLATRGVTVDEAVRMMTTADVRAAADVLRGVYDASGGRDGRVSIEVDPRLAHDTAATVAEAR 135          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_LEIXX (Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2
Query:  347 WYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            W D+L R       L  LIA   V GVT+NP IF  A++   AY++Q R L  +G  +E A +E+   D+ DA  +F  +Y  T G DG VS+EV P LA D   T+  AK
Sbjct:   23 WLDDLSRERIASGGLQRLIAEKNVVGVTTNPTIFAAALAQGAAYDEQVRGLAATGVSVEDAIFEITTDDVADASDIFHDVYTATGGVDGRVSIEVEPGLAHDAAATIAEAK 133          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_ARTCA (Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 49/125 (39.20%), Postives = 65/125 (52.00%), Query Frame = 2
Query:  305 TTLHDLYEQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            TT      + G S W D+L R   +   L  LI    V GVT+NP+IF  AI++   Y+        +G  +E   +E+   D+ DAC LF  +   T G DG VS+EV PRLA DT GT+  AK
Sbjct:    2 TTPTQQLSEAGVSIWLDDLSRGRLETGTLRKLIEEKNVVGVTTNPSIFHAAITAGTDYDATVAAQAAAGASVEETIFEITTTDVADACDLFAPVAAATKGVDGRVSIEVDPRLAWDTNGTIAEAK 126          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_KOCRD (Transaldolase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=tal PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  305 TTLHDLYEQEGQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            TT        G S W D+L R      +L  LI    V GVT+NP IF  A++   +Y +Q  EL  +   ++ A + +   D++DAC LF  I + T G DG VS+EV PRLA D   T   A+
Sbjct:    2 TTPTQKLSDAGVSIWLDDLSRQRLTSGNLQKLIDTENVVGVTTNPTIFAAALADGESYREQVAELAAADTSVDDAVFRITTDDVRDACDLFAPIAEATQGVDGRVSIEVDPRLAQDADATSAMAQ 126          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_MYCLE (Transaldolase OS=Mycobacterium leprae GN=tal PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  335 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAA 664
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC +    ++ ++G DG VS+EV PRLA DT  T+  A
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQA 130          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_MYCLB (Transaldolase OS=Mycobacterium leprae (strain Br4923) GN=tal PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  335 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAA 664
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC +    ++ ++G DG VS+EV PRLA DT  T+  A
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQA 130          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_CAMJJ (Transaldolase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=tal PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKL--KGKKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAK 111          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_CAMJ8 (Transaldolase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=tal PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKL--KGKRTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAK 111          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_CAMJR (Transaldolase OS=Campylobacter jejuni (strain RM1221) GN=tal PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L +  K  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKLKE--KKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAK 111          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_CAMJE (Transaldolase OS=Campylobacter jejuni GN=tal PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  377 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L +  K  +  Y EL I DIQ A      ++ + N  DG++S+E+ PRL D+T  ++  AK
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKLKE--KKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAK 111          
The following BLAST results are available for this feature:
BLAST of DN617842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TAL1_STRCO1.154e-1439.66Transaldolase 1 OS=Streptomyces coelicolor GN=tal1... [more]
TAL_LEIXX1.969e-1441.44Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal... [more]
TAL_ARTCA1.969e-1439.20Transaldolase OS=Arthrobacter chlorophenolicus (st... [more]
TAL_KOCRD4.386e-1437.60Transaldolase OS=Kocuria rhizophila (strain ATCC 9... [more]
TAL_MYCLE5.729e-1438.60Transaldolase OS=Mycobacterium leprae GN=tal PE=3 ... [more]
TAL_MYCLB5.729e-1438.60Transaldolase OS=Mycobacterium leprae (strain Br49... [more]
TAL_CAMJJ1.560e-1140.21Transaldolase OS=Campylobacter jejuni subsp. jejun... [more]
TAL_CAMJ82.038e-1140.21Transaldolase OS=Campylobacter jejuni subsp. jejun... [more]
TAL_CAMJR7.743e-1139.18Transaldolase OS=Campylobacter jejuni (strain RM12... [more]
TAL_CAMJE7.743e-1139.18Transaldolase OS=Campylobacter jejuni GN=tal PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617842 ID=DN617842; Name=DN617842; organism=Citrus sinensis; type=EST; length=670bp
ATCGTACTTGGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTGAGTTTT
TAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAGCTTACA
AATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTC
ACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAA
AAGTTGCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCC
TCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAA
GAGGACAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGT
ATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGT
GGTGTTAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATC
TTCATCGAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAA
AAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGAT
GCATGCAAACTTTTTGAGTCAATCTATGATGAAACCAATGGCGGTGATGG
CTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGA
CTGTGGAGGCAGCAAAATGG
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