DN617841

Overview
NameDN617841
Unique NameDN617841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2701 contig Csv1_Contig2701:1067..1651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_NEIMF (Transaldolase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tal PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = -1
Query:  275 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 583
            +GA + +LLWAST VKNPAYPDTLYV  LIG  TV+T+PD  L+AF+DHG    T+     EA+   +    LGID   +  +L+ +G+  F+++F+ LL  L
Sbjct:  248 QGANRVQLLWASTGVKNPAYPDTLYVDSLIGAHTVNTVPDATLKAFIDHGTAKATLTEGADEAQAQLAETAALGIDVETLAARLQEDGLKQFEEAFEKLLAPL 350          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_MYCUA (Transaldolase OS=Mycobacterium ulcerans (strain Agy99) GN=tal PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  254 KKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 586
            ++GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ L A  DHG V   +I     +A+ ++  LE +GID + V   LE EGV+ F+ S+  LLD  Q + ++L
Sbjct:  260 ERGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTLDAVADHGVVKGDSITGTSGDAQQVFDKLEAIGIDLSDVFDVLESEGVEKFEASWKELLDATQAQLDAL 371          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_MYCMM (Transaldolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tal PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.849e-20
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  254 KKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 586
            ++GA+ QR LWAST VKNP Y DTLYV  L+ P TV+TMP++ L A  DHG V   +I     +A+ ++  LE +GID + V   LE EGV+ F+ S+  LLD  Q + ++L
Sbjct:  260 ERGARVQRPLWASTGVKNPDYSDTLYVTELVAPHTVNTMPEKTLDAVADHGVVKGDSITGTSGDAQQVFDKLEAIGIDLSDVFDVLESEGVEKFEASWKELLDATQAQLDAL 371          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_NEIG2 (Transaldolase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=tal PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.154e-20
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = -1
Query:  275 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 583
            +GA + +LLWAST VKNPAYPDTLYV  LIG  TV+T+PD  L+AF+DHG    T+  +  EA    + +  LGID   +  +L+ +G+  F+++F+ LL  L
Sbjct:  248 QGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKATLTESADEALARLAEIAALGIDVETLAARLQEDGLKQFEEAFEKLLAPL 350          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_ARTCA (Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  242 GAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKLVS 580
            GA  QR LWAST VK+PAYPDTLYV  L+ P  V+TMP++ L A  DHG V+  T+    ++A     ALEKLG+ +N V   LE EG+D F  S+  LL  ++    S +  S
Sbjct:  258 GALPQRPLWASTGVKDPAYPDTLYVTELVAPGVVNTMPEKTLDATFDHGVVTGDTVSGTYADANATLDALEKLGVSYNEVVALLESEGLDKFVASWKELLADVEGALASARKAS 371          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL2_ANASP (Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) GN=tal2 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.565e-19
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = -1
Query:  245 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALE--KLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKLV 583
            KGAK QRLLWASTS K+P Y D +YV  LIGPDTV+T+P   + A  DH  V+  ++  V+EA  +  +L+   + ID N V  +L +EG++ F + F SL+++L+ K   L  V
Sbjct:  267 KGAKVQRLLWASTSTKDPNYSDVMYVDELIGPDTVNTLPPATITACADHCEVANRVETGVAEAYQLIESLKDPDINIDINAVMDELLIEGINKFVQPFQSLMNSLEGKVKLLSPV 381          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_LEIXX (Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.670e-19
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = -1
Query:  269 GAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQE 580
            GA +QR LWAST VK+P+ PDTLYV  L+ P+TV+TMP++ L A  DH  ++  T+    + A+G+  AL  LG+D++ V   LE EGVD F  S+  L++T+++
Sbjct:  265 GANEQRPLWASTGVKDPSLPDTLYVTELVAPNTVNTMPEKTLDATFDHAQLAGDTVTGEYAGAQGVLDALAALGVDYDDVTATLEREGVDKFIVSWGELVETVRK 369          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL2_STRAW (Transaldolase 2 OS=Streptomyces avermitilis GN=tal2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.670e-19
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  254 KKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSL 586
            K  A KQR LWAST VK+PAY DT+YV  L+ P+TV+TMP+  L+A  DHG +   TI     +A     A+EKLGI ++ V   LE EGVD F+ S++ LL + + +   L
Sbjct:  256 KAQANKQRPLWASTGVKDPAYKDTMYVEELVAPNTVNTMPEATLEATADHGEIRGNTIAGTYEQARADLDAVEKLGIAYDDVVQLLEEEGVDKFEASWNDLLKSTEAELQRL 367          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.554e-19
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  287 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSL 583
            KGA+ QR LWASTS K+P+ PDTLYV  L+ P TV+TMP+  LQA  DHG +   TI    ++A+    AL  LGID++ V   LE EGV+ F+ S+  L
Sbjct:  256 KGARPQRPLWASTSTKDPSLPDTLYVTELVAPGTVNTMPESTLQAVYDHGVIRGDTIRGYYADAQATLDALATLGIDYDDVTDTLEREGVEKFEASWTEL 355          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_SACEN (Transaldolase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tal PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  251 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLK 583
            +G K QR LWAST VK+P+Y DT YV  L+ P+TV+TMP+  L A  DH  V    +    +E++ ++ +L   GID + V   LE EGVD F+KS++ LL T++E+ +  K
Sbjct:  255 EGGKPQRPLWASTGVKDPSYSDTRYVDELVAPNTVNTMPEATLFASADHADVRGDQVSGKAAESQQVFDSLSAAGIDLDDVFAVLEREGVDKFEKSWEELLQTVREQLDQAK 366          
The following BLAST results are available for this feature:
BLAST of DN617841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL_NEIMF1.849e-2046.60Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_MYCUA1.849e-2046.43Transaldolase OS=Mycobacterium ulcerans (strain Ag... [more]
TAL_MYCMM1.849e-2046.43Transaldolase OS=Mycobacterium marinum (strain ATC... [more]
TAL_NEIG23.154e-2046.60Transaldolase OS=Neisseria gonorrhoeae (strain NCC... [more]
TAL_ARTCA5.380e-2046.49Transaldolase OS=Arthrobacter chlorophenolicus (st... [more]
TAL2_ANASP1.565e-1944.35Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) ... [more]
TAL_LEIXX2.670e-1945.71Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal... [more]
TAL2_STRAW2.670e-1946.43Transaldolase 2 OS=Streptomyces avermitilis GN=tal... [more]
TAL_ACIC14.554e-1950.00Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL_SACEN5.948e-1943.75Transaldolase OS=Saccharopolyspora erythraea (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617841 ID=DN617841; Name=DN617841; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTCGGCACTAAAACACTTATCATACATAATAATTAT
TGTCATACAGATTATGAGAAGTGGATTGAAAACCCACTAGATTTATTTCA
GTCACAAGGGAAAATAAGAGTCCGTTTGGGGCAGCTGCGCTGCATTCTTG
GTGAAAATTTCTCCAAAAACATAGGTGAGGGCACAGCGCAGCTGCCCCAA
GTGGGTTTTAAGCAAAAAAAAAAACCAATTACAGTTTACAGACTAACCAG
CTTGAGAGAGTTTGCCTTCTCTTGCAGGGTATCCAGCAGACTATCAAAGC
TCTTCTTGAAAGAATCTACCCCTTCAAGTTCGAGTTGAGTGCCAACGTAG
TTCCAATCAATTCCCAACTTCTCCAGTGCACTGTAAATGCCTTCAGCTTC
AGAAACATTCAAGTCAATTGTTCTTGAAACTGCACCATGATCAACAAATG
CTTGGAGAGCTTGGTCTGGCATGGTTGAAACCGTATCAGGTCCAATGAGA
GGAGCAACATATAGAGTGTCAGGGTAGGCAGGATTCTTTACACTGGTTGA
GGCCCACAGAAGTCTCTGCTTCTTTGCACCTTTCTT
back to top