DN617841

Overview
NameDN617841
Unique NameDN617841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2701 contig Csv1_Contig2701:1067..1651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL2_NOSP7 (Transaldolase 2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tal2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.035e-18
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = -1
Query:  245 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALE--KLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANSLKLV 583
            KGA  QRLLWASTS K+P Y D +Y+  L+GPDTV+T+P   ++A  DH  VS  ++ +V+ A  +   L+   + ID + V  +L +EG+D F + F SL+++L++K   L  V
Sbjct:  267 KGATVQRLLWASTSTKDPNYNDVMYIEELVGPDTVNTVPPATIKACADHCNVSDRLETDVNNAYTLIENLKDPDINIDLDTVMDELLVEGIDKFIQPFQSLMNSLEDKIKVLSPV 381          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_THIDA (Transaldolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tal PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.122e-17
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  284 KGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVSRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLL 583
            +GA+ Q LLWAST VKNP Y D LYV PLIG +T++T+PD+ L A  DHG     ++  V EA    +   +LG+D + V  +L+  GV  F+ S+ +LL
Sbjct:  256 RGARPQFLLWASTGVKNPDYHDLLYVEPLIGRETINTLPDKTLAALRDHGQPVPQLEQAVDEASAQLAEFARLGVDLDAVAARLQDAGVKQFETSYQALL 355          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_MYCPA (Transaldolase OS=Mycobacterium paratuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.122e-17
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  257 GAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANS 580
            GA+ QR LWAST VKNP Y DTLYV  L+ P+TV+TMP++ + A  DHG +   T+     +A+ ++  L  +G+D   V   LE EGV+ F  S+  L++  Q++  S
Sbjct:  262 GARVQRPLWASTGVKNPDYSDTLYVTELVAPNTVNTMPEKTIDAVADHGVIRGDTVTGTGPDAQRVFDELAAVGVDLPDVFVVLENEGVEKFVDSWTELMEETQKQLGS 370          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL1_STRAW (Transaldolase 1 OS=Streptomyces avermitilis GN=tal1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.913e-17
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  275 GAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTL 580
            GA KQR LWAST VK+PAY DTLYV  L+ P TV+TMP+  L A  DHG +   T+    ++A    +A+E+LGI ++ V  QLE E V  F+ ++  LL+ +
Sbjct:  264 GAHKQRPLWASTGVKDPAYKDTLYVDELVAPGTVNTMPEGTLNATADHGDIHGDTVTGGYAQARADLAAVERLGISYDEVVKQLEDEAVAKFEVAWGDLLEAV 366          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL_KOCRD (Transaldolase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=tal PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = -1
Query:  272 GAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAVS-RTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQ 580
            GA  QR LWAST VK+P+ PDTLYV  L+ P+TV+TMP++ L A  DH  V+  T+     ++  +  A+ + G+ +  V  QLE EG+  F  S++ LL T++
Sbjct:  258 GANPQRPLWASTGVKDPSLPDTLYVTELVAPNTVNTMPEKTLDATFDHAEVTGDTVTGTYEQSAEVLDAIAEQGVSYQEVVAQLETEGLQKFDASWEELLSTVR 361          
BLAST of DN617841 vs. ExPASy Swiss-Prot
Match: TAL1_STRCO (Transaldolase 1 OS=Streptomyces coelicolor GN=tal1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.567e-17
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  257 AKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSTMPDQALQAFVDHGAV-SRTIDLNVSEAEGIYSALEKLGIDWNYVGTQLELEGVDSFKKSFDSLLDTLQEKANS 577
            A  QR LWAST VK+PA+ DTLYV  L+ P TV+TMP+  L A  DHG V   T+    ++A    +A+E+LG+ ++ V  QLE EGV  F+ ++  LL  + +  +S
Sbjct:  268 ANAQRPLWASTGVKDPAFRDTLYVEELVAPGTVNTMPEATLDAAADHGDVRGDTVTGGYAQARADLAAVERLGVSYDEVVEQLEQEGVAKFEAAWQELLAAVTKSLDS 375          
The following BLAST results are available for this feature:
BLAST of DN617841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TAL2_NOSP75.035e-1841.74Transaldolase 2 OS=Nostoc punctiforme (strain ATCC... [more]
TAL_THIDA1.122e-1745.00Transaldolase OS=Thiobacillus denitrificans (strai... [more]
TAL_MYCPA1.122e-1742.20Transaldolase OS=Mycobacterium paratuberculosis GN... [more]
TAL1_STRAW1.913e-1746.60Transaldolase 1 OS=Streptomyces avermitilis GN=tal... [more]
TAL_KOCRD4.263e-1742.31Transaldolase OS=Kocuria rhizophila (strain ATCC 9... [more]
TAL1_STRCO5.567e-1743.52Transaldolase 1 OS=Streptomyces coelicolor GN=tal1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617841 ID=DN617841; Name=DN617841; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTCGGCACTAAAACACTTATCATACATAATAATTAT
TGTCATACAGATTATGAGAAGTGGATTGAAAACCCACTAGATTTATTTCA
GTCACAAGGGAAAATAAGAGTCCGTTTGGGGCAGCTGCGCTGCATTCTTG
GTGAAAATTTCTCCAAAAACATAGGTGAGGGCACAGCGCAGCTGCCCCAA
GTGGGTTTTAAGCAAAAAAAAAAACCAATTACAGTTTACAGACTAACCAG
CTTGAGAGAGTTTGCCTTCTCTTGCAGGGTATCCAGCAGACTATCAAAGC
TCTTCTTGAAAGAATCTACCCCTTCAAGTTCGAGTTGAGTGCCAACGTAG
TTCCAATCAATTCCCAACTTCTCCAGTGCACTGTAAATGCCTTCAGCTTC
AGAAACATTCAAGTCAATTGTTCTTGAAACTGCACCATGATCAACAAATG
CTTGGAGAGCTTGGTCTGGCATGGTTGAAACCGTATCAGGTCCAATGAGA
GGAGCAACATATAGAGTGTCAGGGTAGGCAGGATTCTTTACACTGGTTGA
GGCCCACAGAAGTCTCTGCTTCTTTGCACCTTTCTT
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