DN617840

Overview
NameDN617840
Unique NameDN617840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1684 contig Csv1_Contig1684:399..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617840 vs. ExPASy Swiss-Prot
Match: C81D1_ARATH (Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 55/210 (26.19%), Postives = 99/210 (47.14%), Query Frame = 1 
Query:   13 YGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRF---ESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG-EINEDNVLY-IVENINVAAIETTLWSIEWGIAELVNHP 627
            YG+HWR +RR+ T+  F+   +    +   DE  R++  + +        + L+  L  + +NN+ R+M  +R+   E+ D+    R++ L  +    A +   N  D++PILR F   Y    K++ E       D F++    L   K    E+    IDH+L  Q    E   D ++  I+  + +A   T+  ++EW ++ L+NHP
Sbjct:  128 YGDHWRNLRRLCTIEIFSTHRLNCFLYVRTDEVRRLISRLSRLAGTKKTVVELKPMLMDLTFNNIMRMMTGKRYYGEETTDEEEAKRVRKLVADVG--ANTSSGNAVDYVPILRLF-SSYENRVKKLGEE-----TDKFLQ---GLIDDKRGQQETGTTMIDHLLVLQKSDIEYYTDQIIKGIILIMVIAGTNTSAVTLEWALSNLLNHP 326
The following BLAST results are available for this feature:
BLAST of DN617840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C81D1_ARATH6.856e-1126.19Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CY... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617840 ID=DN617840; Name=DN617840; organism=Citrus sinensis; type=EST; length=629bp
GTGTTCACAGTGTACGGCGAGCACTGGCGGAAGATGCGGAGGATCATGAC
CGTCCCTTTCTTCACGAACAAAGTGGTTCAGCAGCAGCGGTTTAATTGGG
AAGACGAGGCCGCTAGAGTCGTTGAGGATGTTAAGAAGGACCCCGAGGCG
GCGACCAATGGGATCGTCTTGAGGAGGCGGCTGCAGCTTATGATGTACAA
CAACATGTACAGGATTATGTTTGATAGAAGATTCGAGAGTCAGGATGATC
CTTTGTTTAACAGATTAAAGGCTTTGAATGGTGAGAGGAGTCGGTTGGCC
CAGAGCTTTGAGTACAATTACGGTGATTTTATTCCCATTTTGAGACCTTT
CTTGAGAGGCTACTTGAAGATTTGTAAGGAAGTTAAAGAAAGGAGACTCC
AGCTCTTCAAGGACTACTTTGTTGAGGAGAGAAAGAAATTGGCAAGCACG
AAGAGCATGAGTAATGAAAGCTTGAAATGCGCAATCGATCATATTTTGGA
CGCTCAGACAAAGGGAGAAATCAACGAGGACAACGTTCTATACATCGTTG
AGAACATCAATGTTGCCGCGATCGAGACAACTCTTTGGTCGATCGAGTGG
GGAATTGCAGAGCTAGTGAATCATCCTGA
back to top