DN617832

Overview
NameDN617832
Unique NameDN617832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13457 contig Csv1_Contig13457:1229..1681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617832 vs. ExPASy Swiss-Prot
Match: CP1A1_ORYLA (Cytochrome P450 1A1 OS=Oryzias latipes GN=cyp1a1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 2
Query:   35 ILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPW---LPVATLWRNLRKICNS--HAFSS 412
            ++ + L +F++    G R+LP GPTP P+IGNLL+LG KP+ SL +++K  G +  ++ G    VV S     ++ L  Q   F  R  PD +Y+      G         A +WR  RK+  S   +FSS
Sbjct:   26 VVYLLLKHFNKEIPGGLRQLP-GPTPLPIIGNLLKLGSKPYLSLTEMSKRFGDVFQIQIGMRPVVVLSGNETVRQALIKQGDDFSGR--PD-LYSFQFINDGKSLAFSTDQAGVWRARRKLAYSALRSFSS 152          
BLAST of DN617832 vs. ExPASy Swiss-Prot
Match: C7D95_MENGR (Cytochrome P450 71D95 OS=Mentha gracilis GN=CYP71D95 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 37/121 (30.58%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   86 RRLPPGPTPYPVIGNL-LELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDAYQHLRR 445
            + LPPGP   P++G+L L  G  P  ++A +AK +GP+  ++ G+V +VV SS    KE ++  D +  +R          +    + + P +  WR +RKIC S   S+R + ++  +R+
Sbjct:   32 QNLPPGPPKLPLVGHLHLLWGKLPQHAMADMAKKYGPVTHVQLGEVFSVVLSSREATKEAMKLLDPACADRFESIGTRIMWYDNDDIIFSPYSDHWRQMRKICVSELLSARNVRSFGFIRQ 152          
BLAST of DN617832 vs. ExPASy Swiss-Prot
Match: C71BF_ARATH (Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=CYP71B15 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 37/135 (27.41%), Postives = 68/135 (50.37%), Query Frame = 2
Query:   35 ILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDAYQHL 439
            +L+  +  F    K    +LPPGP   P+IGNL +      ++   LA+++GP+  L++G V  V  SS   A+E+L+  D   C+R     + A  ++   +   P    W  +RK+     FS ++L +++++
Sbjct:    9 VLLPLILIFLNVLKPSKYKLPPGPKKLPIIGNLHQRRTLHPRNRRNLAEMYGPVALLQYGFVPVVAISSKEAAEEVLKINDLECCSRPEAAGMRATFYNFKDIGMAPFGDEWSLMRKLSVVELFSVKKLQSFKYI 143          
The following BLAST results are available for this feature:
BLAST of DN617832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
CP1A1_ORYLA9.275e-1134.35Cytochrome P450 1A1 OS=Oryzias latipes GN=cyp1a1 P... [more]
C7D95_MENGR9.275e-1130.58Cytochrome P450 71D95 OS=Mentha gracilis GN=CYP71D... [more]
C71BF_ARATH9.275e-1127.41Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617832 ID=DN617832; Name=DN617832; organism=Citrus sinensis; type=EST; length=453bp
GTAAAGCTGCGTACCATGGCTTCTATTCTCGTGGATTTTGGTCGTCGCTT
TAAATTACTTTTCAAGAGGATTCAAATCTGGATCCAGAAGGCTTCCACCG
GGACCGACGCCTTATCCGGTGATCGGAAACCTCCTGGAACTCGGCGACAA
ACCTCACAAGTCACTTGCTAAACTTGCCAAGATTCATGGCCCCATAATGA
GTCTAAAATTTGGCCAGGTGACCACAGTTGTCTTTTCTTCTGCAGCCATG
GCCAAAGAAATCCTTCAAAATCAAGACACATCTTTCTGTAATCGAACAAT
CCCAGACGCAATCTACGCCCACGGCCATCATGAATTCGGGATGCCCTGGC
TGCCTGTGGCGACACTGTGGAGAAATCTTCGAAAAATATGCAACTCACAT
GCTTTCTCTAGTCGCCAACTCGATGCCTATCAGCACCTTCGGCGTAAGAA
AAT
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