DN617830

Overview
NameDN617830
Unique NameDN617830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:591..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.168e-18
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = -3
Query:  273 KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 485
            +Y   IGPGVYDIHSPR+P T+E+ + I      L+ + LWVNPDCGLKTRK+ EV+PAL+NMVAAA+ LR
Sbjct:  703 EYPNQIGPGVYDIHSPRVPETDEMKELIVLARTRLQDSQLWVNPDCGLKTRKWEEVRPALANMVAAARELR 773          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BURCC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=metE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = -3
Query:  264 KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 485
            KY   IGPGVYDIHSP IP+ + I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK+LR Q+
Sbjct:  690 KYPNEIGPGVYDIHSPNIPTQDHIVGLMRKAAERIPAERLWVNPDCGLKTRQWAEVIPALTNMVAAAKMLRNQV 763          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = -3
Query:  267 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 482
            Y   IGPGVYDIHSPR+PS EE+   + K + V+    LW+NPDCGLKTRK+ EV PAL NMV AA+ +R +
Sbjct:  711 YPNEIGPGVYDIHSPRVPSVEEMVGLMEKAVKVVPAERLWINPDCGLKTRKWAEVTPALENMVEAARQVRAR 782          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_ACIF2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = -3
Query:  267 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 482
            Y   IGPGVYDIHSPR+PS EE+   + K + V+    LW+NPDCGLKTRK+ EV PAL NMV AA+ +R +
Sbjct:  711 YPNEIGPGVYDIHSPRVPSVEEMVGLMEKAVKVVPAERLWINPDCGLKTRKWAEVTPALENMVEAARQVRAR 782          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = -3
Query:  261 GPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 467
            GPGVYDIHSPRIPS +EI DRI ++L  ++   +W+NPDCGLKTR   E  P+L N+VAAAK +R +LA
Sbjct:  699 GPGVYDIHSPRIPSEQEIEDRIYEILKKMDVEKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLA 767          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = -3
Query:  273 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 482
            Y   IGPGVYDIHSPR+PS EE+ + I   L  LE + +WVNPDCGLKTR++ EV+P+L NMV AA+ +R
Sbjct:  695 YPNEIGPGVYDIHSPRVPSVEEMEELIRTALDALEPSQMWVNPDCGLKTRRWVEVQPSLENMVQAAENVR 764          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_DICDI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Dictyostelium discoideum GN=metE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  273 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 482
            Y   IGPG+YDIHSPRIPS E++ DR+ +ML  L TN+LW+NPDCGLKTR+    + AL NMV  AK  R
Sbjct:  749 YTNEIGPGLYDIHSPRIPSVEDMKDRVEQMLKYLSTNLLWINPDCGLKTREPETTRLALINMVKVAKQFR 818          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BURCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = -3
Query:  264 KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 485
            KY   IGPGVYDIHSP IP+ + I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK LR Q+
Sbjct:  690 KYPNEIGPGVYDIHSPNIPTQDHIVGLMKKAAERIPAERLWVNPDCGLKTRQWAEVIPALTNMVAAAKTLRNQV 763          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BURCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=metE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.399e-18
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = -3
Query:  264 KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 485
            KY   IGPGVYDIHSP IP+ + I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK LR Q+
Sbjct:  690 KYPNEIGPGVYDIHSPNIPTQDHIVGLMKKAAERIPAERLWVNPDCGLKTRQWAEVIPALTNMVAAAKTLRNQV 763          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_STAES (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=metE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.439e-18
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  258 EGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 494
            E + Y  GIG GVYDIHSPRIP+ EEI   IN+ L  ++ ++ WVNPDCGLKTRK  EVK AL+ +V A K  R +  S
Sbjct:  667 EDINYDLGIGLGVYDIHSPRIPTEEEITTAINRSLQQIDRSLFWVNPDCGLKTRKENEVKDALTVLVNAVKKKRQESES 745          
The following BLAST results are available for this feature:
BLAST of DN617830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_BRAJA1.168e-1861.975-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCC1.526e-1859.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF51.526e-1858.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF21.526e-1858.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA1.993e-1860.875-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD2.602e-1860.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DICDI2.602e-1860.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCH3.399e-1859.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCA3.399e-1859.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAES4.439e-1855.705-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617830 ID=DN617830; Name=DN617830; organism=Citrus sinensis; type=EST; length=496bp
TAAAGGTATTCTCATCGATTTACGGCCACTGATAGCAAGCCAGGGGCCTT
TAAAAACGGAAAATACAAGCAAAGAAAAATAGAAGCCAATTGCTCAATAG
TGCATAATATGCATACGGAAAATTTTCATCACATCACGACCCACAGTTAT
TCGAATAGGTAATAAGACAGGAATTTTCTTTCTTTGTTTAAAGTGAAAAA
AAAAAAAATCAATGGCTCAGGAAGTATCCCTCCAATCTCCAGAACCACTC
ACTTGGCACTGGCAAGCTGGGTGCGGAGTAGCTTGGCAGCAGCGACCATG
TTTGAGAGGGCTGGCTTCACCTCAGTGTACTTGCGAGTCTTAAGACCACA
GTCAGGGTTAACCCACAAAATGTTGGTTTCTAGCACAGCAAGCATCTTGT
TGATTCTGTCAGCAATTTCTTCAGTTGATGGTATTCTTGGAGAGTGGATG
TCATACACACCAGGGCCAATTCCAGCACCATACTTGACTCCCTCAC
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