DN617830

Overview
NameDN617830
Unique NameDN617830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:591..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_PSEMY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas mendocina (strain ymp) GN=metE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 43/78 (55.13%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  261 EGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 494
            E   Y   IGPGVYDIHSPR+P + E+A  + K    +    LWVNPDCGLKTR + E + AL NMVAAA+ LR +LA
Sbjct:  690 ERFAYPNEIGPGVYDIHSPRVPDSAEMAGLLRKAARRIPLERLWVNPDCGLKTRAWPETEAALVNMVAAARQLRAELA 767          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_MESSB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesorhizobium sp. (strain BNC1) GN=metE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = -3
Query:  273 KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 485
            +Y   IGPGV+DIHSPR+P  +E+AD + K    L+   +WVNPDCGLKTRK+ EV+ AL+NMV AA+ +R
Sbjct:  697 RYPNDIGPGVFDIHSPRVPPADEMADLLRKAEDGLDPRQIWVNPDCGLKTRKWEEVRFALANMVEAARQMR 767          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BIFLI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=metE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = -3
Query:  264 GPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 467
            GPGVYDIHSPRIPS +EI DRI ++L  ++   +W+NPDCGLKTR   E  P+L ++VAAAK +R +L
Sbjct:  698 GPGVYDIHSPRIPSEKEIEDRIYEILDKIDVKKVWINPDCGLKTRGNDETWPSLEHLVAAAKAVRARL 765          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_THIDA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  273 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 482
            Y   IGPGVYDIHSP IP+ + I + I K    +    LW+NPDCGLKTR++ EV PAL NMVAAA+ LR
Sbjct:  693 YPNEIGPGVYDIHSPNIPTPQHIVNLIKKAAERIPAERLWINPDCGLKTRQWNEVIPALGNMVAAARTLR 762          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BACSU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus subtilis GN=metE PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  267 YGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 482
            Y  G+G GVYDIHSPR+PSTEE+ + I   LAV  T+  WVNPDCGLKTR+  E   AL NMV AAK  R Q
Sbjct:  686 YLKGLGLGVYDIHSPRVPSTEEMYNIIVDALAVCPTDRFWVNPDCGLKTRQQEETVAALKNMVEAAKQARAQ 757          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_BACCN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=metE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  264 EGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 494
            E   Y  GIG GVYDIHSPR+PS EE+   + + L V      W+NPDCGLKTR+  EV PAL +MV AAK  RT L
Sbjct:  682 EQTTYEKGIGLGVYDIHSPRVPSKEEMYTIVEQSLKVCNPKYFWINPDCGLKTRRTEEVLPALEHMVEAAKEARTLL 758          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_VIBPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio parahaemolyticus GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  261 EGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 494
            E   Y   IGPGVYDIHSP IP+ E I   I K    +    LWVNPDCGLKTR + E + AL+N+V+AAK LR +LA
Sbjct:  683 EEFNYPNEIGPGVYDIHSPNIPTEEWIEGLIKKAAEKIPVQRLWVNPDCGLKTRNWAETEAALANLVSAAKKLRAELA 760          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_VIBFM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio fischeri (strain MJ11) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  258 EGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 494
            E   Y   IGPGVYDIHSP IPS E I D I    A +    LWVNPDCGLKTR + E + AL NMV AAK LR +  S
Sbjct:  693 EDFNYPNEIGPGVYDIHSPNIPSQEWIVDLIETAAARVPVERLWVNPDCGLKTRNWKETEAALENMVKAAKALRKKWQS 771          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_VIBF1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  258 EGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 494
            E   Y   IGPGVYDIHSP IPS E I D I    A +    LWVNPDCGLKTR + E + AL NMV AAK LR +  S
Sbjct:  693 EDFNYPNEIGPGVYDIHSPNIPSQEWIVDLIETAAARVPVERLWVNPDCGLKTRNWKETEAALENMVKAAKALRKKWQS 771          
BLAST of DN617830 vs. ExPASy Swiss-Prot
Match: METE_MYCPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium paratuberculosis GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  273 VKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 488
            V +   +GPGVYDIHSPR+PST EIA+ +   L  +    LWVNPDCGLKTR   EV  +L NMVAAA  +R
Sbjct:  682 VGFSNSVGPGVYDIHSPRVPSTAEIAESLRAALRAVPAERLWVNPDCGLKTRNPDEVSASLKNMVAAAHEVR 753          
The following BLAST results are available for this feature:
BLAST of DN617830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_PSEMY4.908e-1755.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESSB4.908e-1756.345-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLI4.908e-1758.825-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THIDA6.410e-1758.575-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACSU6.410e-1761.115-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACCN6.410e-1755.845-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBPA8.371e-1755.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBFM8.371e-1756.965-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBF18.371e-1756.965-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCPA8.371e-1756.945-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617830 ID=DN617830; Name=DN617830; organism=Citrus sinensis; type=EST; length=496bp
TAAAGGTATTCTCATCGATTTACGGCCACTGATAGCAAGCCAGGGGCCTT
TAAAAACGGAAAATACAAGCAAAGAAAAATAGAAGCCAATTGCTCAATAG
TGCATAATATGCATACGGAAAATTTTCATCACATCACGACCCACAGTTAT
TCGAATAGGTAATAAGACAGGAATTTTCTTTCTTTGTTTAAAGTGAAAAA
AAAAAAAATCAATGGCTCAGGAAGTATCCCTCCAATCTCCAGAACCACTC
ACTTGGCACTGGCAAGCTGGGTGCGGAGTAGCTTGGCAGCAGCGACCATG
TTTGAGAGGGCTGGCTTCACCTCAGTGTACTTGCGAGTCTTAAGACCACA
GTCAGGGTTAACCCACAAAATGTTGGTTTCTAGCACAGCAAGCATCTTGT
TGATTCTGTCAGCAATTTCTTCAGTTGATGGTATTCTTGGAGAGTGGATG
TCATACACACCAGGGCCAATTCCAGCACCATACTTGACTCCCTCAC
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