DN617829

Overview
NameDN617829
Unique NameDN617829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8458 contig Csv1_Contig8458:7..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.013e-57
Identity = 114/177 (64.41%), Postives = 137/177 (77.40%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     +K +RT  KS D+YL+LLVKLYR+L RRT+S FN +IL+RLFMS++N+PPLSLSRL   MK   +E  IAVVVGT+T+D+R Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G  TVLL+G +NAREAV+HFGPAPG P SHTKPYVR+KG +  R
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHERAR 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.525e-56
Identity = 111/174 (63.79%), Postives = 137/174 (78.74%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 565
            MGID +     +K +RT  KS D+YL+LLVKLYR+L RRT++ FN+++L+RLFMS++N+PPLSLSRL   MK   +E  IAVVVGT+T+D R Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVRSKG +
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRSKGHE 173          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 110/177 (62.15%), Postives = 139/177 (78.53%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG--KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     +K +RT  KS DIYL+LLVKLYR+L RRT++ FN+++L+RLFMS++N+PP+S+SRL   MK   +E  IAVVVGTVT+D+R Y++P + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVR+KG +  R
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEKAR 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.427e-54
Identity = 111/174 (63.79%), Postives = 134/174 (77.01%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 565
            MGID+    K K  +R  PKS D+YL+L+VKLY+FL RRT S FN ++ +RLFMS++N+ PLSLSRL   MK  G+E KIAVV+GTVT+DIR  EVP L V ALR T  AR RI KAGG+ +T DQLAL+APLG+ TVLL+GP+ AREA +HFGPAPGVP SHTKPYV SK R+
Sbjct:    1 MGIDISHRNKRKVVRRN-PKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRHFGPAPGVPGSHTKPYVISKSRE 173          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.180e-54
Identity = 108/177 (61.02%), Postives = 134/177 (75.71%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID ++    + ++RTAPKS++ YL+LL KLY FL RRT   FN ++LKRL MS+ N+ PLSL+++   +K  G E K  V + TVTDD R YEVP + + AL  TE ARARI  AGGE +T DQLALR+P G+NTV L+GP++AREA KHFGPAPGVPHSHTKP+VRSKGRKFER
Sbjct:    1 MGID-ISHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKVARVVKQAGNEKKTVVTLSTVTDDARLYEVPKISLAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPHVRSKGRKFER 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 7.084e-54
Identity = 107/178 (60.11%), Postives = 138/178 (77.53%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDK-IAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     +K +RT PKS D+YL LLVKLYRFL RRT   FNK++++RLFMS+ N PP+SL+R+ + MK  GK++K +AVV+GTVT+D+R  +VP L V ALR T+ AR RI K GG+  TFDQLAL +P G+NTVL++G + ARE  KHFG APGVPHS+T+PYV+SKGRKFE+
Sbjct:    1 MGID-INHKWDRKVRRTRPKSLDVYLSLLVKLYRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSKGRKFEK 177          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.251e-54
Identity = 108/177 (61.02%), Postives = 133/177 (75.14%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     + ++RTAPKS++ YL+LL KLY FL RRT   FN ++LKRL MS+ N+ PLSL++L   ++  G E+K  V + TVTDD R Y VP + V AL  TE ARARI  AGGE +T DQLAL++P G+NTV L+GP++AREA KHFGPAPGVPHSHTKPYVRSKGRKFER
Sbjct:    1 MGID-INHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFER 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.208e-53
Identity = 107/177 (60.45%), Postives = 131/177 (74.01%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID  +    +   RTAPKSD++YLKLLVKLY FL RRTD+ FNKV+LK LF+SK+N+PP+S+SR+   +K  G  +K  VVVGTVTDD R +E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+HFG     PH    P + S GRKFER
Sbjct:    1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFER 174          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.061e-53
Identity = 113/179 (63.13%), Postives = 131/179 (73.18%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGK----EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     +KS+R+ P S+++YLKLLVKLYRFL RRTDS FNK ILKRLF SK N+PP+S+S++      K    E K  V+VGTVTDD R   VP L V ALRFT++ARARI KAGGE LT DQLALRAP G NTVLLRG K+AREA +HFG     PH H  PYVRS+GRKFER
Sbjct:    1 MGID-IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFER 175          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.692e-53
Identity = 112/179 (62.57%), Postives = 132/179 (73.74%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGK----EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     KKS+R+ P S+++YLKLLVKLYRFL RRTDS FNK ILKRLF SK N+PP+S+S++      K    ++K  VVVGTVTDD R   VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG     PH H  PYVRS+GRKFER
Sbjct:    1 MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFER 175          
The following BLAST results are available for this feature:
BLAST of DN617829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_SPOFR4.013e-5764.4160S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18_PLUXY1.525e-5663.7960S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_BOMMO3.397e-5662.1560S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]
RL18_TAEAS1.427e-5463.7960S ribosomal protein L18 OS=Taenia asiatica GN=RP... [more]
RL18_CAEBR3.180e-5461.0260S ribosomal protein L18 OS=Caenorhabditis briggs... [more]
RL18_ANOGA7.084e-5460.1160S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18_CAEEL9.251e-5461.0260S ribosomal protein L18 OS=Caenorhabditis elegan... [more]
RL18_YEAST1.208e-5360.4560S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18B_SCHPO2.061e-5363.1360S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18A_SCHPO2.692e-5362.5760S ribosomal protein L18-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617829 ID=DN617829; Name=DN617829; organism=Citrus sinensis; type=EST; length=576bp
TGAACACTTACCCGCCGCGCCAGCGCCCAGCCACTCGCCAACCGTCGCCA
TGGGTATCGATTTGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAACC
GCTCCCAAGTCCGATGATATCTACCTTAAGCTCCTCGTCAAGTTGTACCG
GTTTCTTGTTCGAAGAACCGACAGCAACTTTAATAAAGTGATTCTGAAGA
GGCTGTTTATGAGTAAAGTCAACAAGCCACCACTTTCACTCTCAAGGCTC
ATCAACTTCATGAAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGGAC
AGTCACCGATGACATTAGGGCTTATGAGGTGCCGGCATTGAAGGTTACTG
CTTTGAGGTTTACTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCGGA
GAGTGCTTGACTTTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAGAA
CACGGTCCTTCTTAGAGGTCCAAAGAATGCTCGTGAGGCAGTGAAGCACT
TTGGTCCAGCTCCTGGTGTACCACACAGCCACACCAAGCCTTACGTGCGA
TCAAAGGGAAGGAAGTTTGAGCGTGC
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