DN617829

Overview
NameDN617829
Unique NameDN617829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.336e-52
Identity = 111/178 (62.36%), Postives = 135/178 (75.84%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GK-EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     +K +RT PKS D+YL+LLVKLYRFL RRT   FNK+IL+RLFMS+ N+PP+SLSR+   MK  GK E+ IAVVVGTVT+D R    P + V ALR TE AR RI K GG+  TFDQLAL AP G+NTVL++G + AREA  HFG APGVPHS+T+PYV+SKGRK+E+
Sbjct:    1 MGID-INHKWDRKVRRTKPKSLDVYLRLLVKLYRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSKGRKYEK 177          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.907e-48
Identity = 99/165 (60.00%), Postives = 119/165 (72.12%), Query Frame = 2
Query:   83 KKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKG-KEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            +K+ R    S + Y  LLVKLYRFL RRT+S FNKV+LKRL  +K N+PP+S+SR+ N MK  K  KIAV VGTV DD R  + P L V ALRFTETAR+RI KAGG+ L+FDQ AL  P G NT L++G   ARE  KHFG APG+P SH +PYVRS+G KF+R
Sbjct:   11 RKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEGIKFQR 175          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.431e-46
Identity = 99/183 (54.10%), Postives = 131/183 (71.58%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFM--------KGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S FNK+I KRL  S+ N+ P+SLSR+   M        KGK+  IAV+VG V DD+R   +PAL++ ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G++ +R
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQR 182          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.273e-46
Identity = 106/176 (60.23%), Postives = 120/176 (68.18%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFER 574
            MGIDLV  G+ KK  R A  S + YL+LLVKLY+FL RRTD +FNKV+LKRL M +  K PLSLS+L   M+ + D  AVVVGTVT+D R   VP L V ALR TETAR RI  +GGE LTFDQL  R+P G    LLRG   AREAVKHF     G P    KPYVRSKGRKFE+
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKGRKFEK 172          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.602e-45
Identity = 96/183 (52.46%), Postives = 129/183 (70.49%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S FNK++ +RL  S+ N+ P+SLSR+   MK        GK+  IAV+VG V DD+R   +PAL+V ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+  ++G++ +R
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGKERQR 182          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.339e-44
Identity = 102/176 (57.95%), Postives = 119/176 (67.61%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFER 574
            MGIDLV  G+ KK  R A  S + YL+LLVKL++FL RRTD  FNK++LKRL M +  K PLSLS+L   M+ + +  AVV+GTVT D R   VP L V ALR TETAR RI  +GGE LTFDQL  R+P+G    LLRG   AREAVKHF     G P    KPYVRSKGRKFE+
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKGRKFEK 172          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.645e-44
Identity = 94/183 (51.37%), Postives = 125/183 (68.31%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MG+DL    K  +  R    S + Y+KLL+KLY+FL +RT S FNKV+ +RL  S+ N+ P+SLSR+   MK         K   IAVVVG V DD+R   +PA++V ALRF+++AR  I  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY  ++G++ +R
Sbjct:    1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGKETKR 182          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRR-TDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 553
            MGI ++   K +  +   P S+DI   LLVK+YR    + + + FNKV+L+RLFMS+ ++PP+S+SR+I  MK  G+E++ AVVVGTVTDD+R +E+P LKV+AL+ T   R RI K   + + F  LAL AP  Q +VLL  P+NAR+  +HF  AP +P  HTKPYV S
Sbjct:    1 MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 6.038e-29
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALR 358
            MG+D +   K +K +R  PKS DIYL+LLVKL RFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+   MK  G+E K AVVVGT+TDD+R  EVP LKV ALR
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104          
The following BLAST results are available for this feature:
BLAST of DN617829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_AEDAE1.336e-5262.3660S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18_DICDI9.907e-4860.0060S ribosomal protein L18 OS=Dictyostelium discoid... [more]
RL18_TRYBB1.431e-4654.1060S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_THEPA9.273e-4660.2360S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_TRYCR4.602e-4552.4660S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_THEAN1.339e-4457.9560S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_LEIMA6.645e-4451.3760S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_SALSA4.468e-3248.5460S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]
RL18_PIG6.038e-2963.8160S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617829 ID=DN617829; Name=DN617829; organism=Citrus sinensis; type=EST; length=576bp
TGAACACTTACCCGCCGCGCCAGCGCCCAGCCACTCGCCAACCGTCGCCA
TGGGTATCGATTTGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAACC
GCTCCCAAGTCCGATGATATCTACCTTAAGCTCCTCGTCAAGTTGTACCG
GTTTCTTGTTCGAAGAACCGACAGCAACTTTAATAAAGTGATTCTGAAGA
GGCTGTTTATGAGTAAAGTCAACAAGCCACCACTTTCACTCTCAAGGCTC
ATCAACTTCATGAAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGGAC
AGTCACCGATGACATTAGGGCTTATGAGGTGCCGGCATTGAAGGTTACTG
CTTTGAGGTTTACTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCGGA
GAGTGCTTGACTTTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAGAA
CACGGTCCTTCTTAGAGGTCCAAAGAATGCTCGTGAGGCAGTGAAGCACT
TTGGTCCAGCTCCTGGTGTACCACACAGCCACACCAAGCCTTACGTGCGA
TCAAAGGGAAGGAAGTTTGAGCGTGC
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