DN617828

Overview
NameDN617828
Unique NameDN617828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.547e-36
Identity = 81/131 (61.83%), Postives = 95/131 (72.52%), Query Frame = -2
Query:  218 ILKRLFMSKVNKPPLSLSRLINFMKGK----EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 598
            ILKRLF SK N+PP+S+S++      K    ++K  VVVGTVTDD R   VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG     PH H  PYVRS+GRKFE
Sbjct:   47 ILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFE 174          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.326e-36
Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            V+LK LF+SK+N+PP+S+SR+   +K  G  +K  VVVGTVTDD R +E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+HFG     PH    P + S GRKFE
Sbjct:   47 VVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFE 173          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 75/134 (55.97%), Postives = 98/134 (73.13%), Query Frame = -2
Query:  224 VILKRLFMSKVNKPPLSLSRLINFM--------KGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 601
            +I KRL  S+ N+ P+SLSR+   M        KGK+  IAV+VG V DD+R   +PAL++ ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G++
Sbjct:   47 LIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKE 179          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32
Identity = 72/134 (53.73%), Postives = 96/134 (71.64%), Query Frame = -2
Query:  224 VILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 601
            ++ +RL  S+ N+ P+SLSR+   MK        GK+  IAV+VG V DD+R   +PAL+V ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+  ++G++
Sbjct:   47 LVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGKE 179          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 71/134 (52.99%), Postives = 94/134 (70.15%), Query Frame = -2
Query:  224 VILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 601
            V+ +RL  S+ N+ P+SLSR+   MK         K   IAVVVG V DD+R   +PA++V ALRF+++AR  I  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY  ++G++
Sbjct:   47 VVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGKE 179          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.076e-30
Identity = 77/129 (59.69%), Postives = 85/129 (65.89%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFE 601
            V+LKRL M +  K PLSLS+L   M+ + D  AVVVGTVT+D R   VP L V ALR TETAR RI  +GGE LTFDQL  R+P G    LLRG   AREAVKHF     G P    KPYVRSKGRKFE
Sbjct:   47 VVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKGRKFE 171          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.768e-29
Identity = 74/129 (57.36%), Postives = 85/129 (65.89%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFE 601
            ++LKRL M +  K PLSLS+L   M+ + +  AVV+GTVT D R   VP L V ALR TETAR RI  +GGE LTFDQL  R+P+G    LLRG   AREAVKHF     G P    KPYVRSKGRKFE
Sbjct:   47 IVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKGRKFE 171          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.686e-27
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = -2
Query:  236 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 601
            V+L+RLFMS+ ++PP+S+SR+I  MK  G+E++ AVVVGTVTDD+R +E+P LKV+AL+ T   R RI K   + + F  LAL AP  Q +VLL  P+NAR+  +HF  AP +P  HTKPYV S
Sbjct:   45 VVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = -2
Query:  431 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALR 601
            V+LKRLFMS+ N+PPLSLSR+   MK  G+E K AVVVGT+TDD+R  EVP LKV ALR
Sbjct:   46 VVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104          
The following BLAST results are available for this feature:
BLAST of DN617828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18A_SCHPO2.547e-3661.8360S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_YEAST3.326e-3659.2360S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18_TRYBB1.545e-3355.9760S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_TRYCR8.478e-3253.7360S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_LEIMA5.495e-3152.9960S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_THEPA6.076e-3059.6960S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_THEAN1.768e-2957.3660S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_SALSA3.686e-2753.2360S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]
RL18_PIG7.972e-1467.8060S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617828 ID=DN617828; Name=DN617828; organism=Citrus sinensis; type=EST; length=602bp
CCCCTTTTTTTTAATTGAACATAATAAAATTTGCATCTCAAAACAGGGCA
NTCCGTTGTCATGGTAAACAAACCAACAGTAAGAAAAATAGGGAACCATA
ATTGATACCTAGAGTCTAGCAAAATTTCAATCACGATAGTAAGAAATGAC
ACAACTGCCTCACAATTTAGTAAACTTAAACTCTGAAACCCCTGCTGTTC
CTCCTTCCTCTAGCACGCTCAAACTTCCTTCCCTTTGATCGCACGTAAGG
CTTGGTGTGGCTGTGTGGTACACCAGGAGCTGGACCAAAGTGCTTCACTG
CCTCACGAGCATTCTTTGGACCTCTAAGAAGGACCGTGTTCTGTCCCAAT
GGAGCCCTGAGAGCAAGCTGATCAAAAGTCAAGCACTCTCCGCCTGCCTT
CTCAATCCGAGCTCTTGCAGTCTCAGTAAACCTCAAAGCAGTAACCTTCA
ATGCCGGCACCTCATAAGCCCTAATGTCATCGGTGACTGTCCCCACTACC
ACCGCAATCTTATCCTCCTTTCCCTTCATGAAGTTGATGAGCCTTGAGAG
TGAAAGTGGTGGCTTGTTGACTTTACTCATAAACAGCCTCTTCAGAATCA
CT
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