DN617828
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.547e-36 Identity = 81/131 (61.83%), Postives = 95/131 (72.52%), Query Frame = -2 Query: 218 ILKRLFMSKVNKPPLSLSRLINFMKGK----EDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 598 ILKRLF SK N+PP+S+S++ K ++K VVVGTVTDD R VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG PH H PYVRS+GRKFE Sbjct: 47 ILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFE 174
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 3.326e-36 Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = -2 Query: 218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601 V+LK LF+SK+N+PP+S+SR+ +K G +K VVVGTVTDD R +E P V ALRFT ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+HFG PH P + S GRKFE Sbjct: 47 VVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFE 173
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33 Identity = 75/134 (55.97%), Postives = 98/134 (73.13%), Query Frame = -2 Query: 224 VILKRLFMSKVNKPPLSLSRLINFM--------KGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 601 +I KRL S+ N+ P+SLSR+ M KGK+ IAV+VG V DD+R +PAL++ ALRF+++AR RI AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G++ Sbjct: 47 LIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKE 179
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32 Identity = 72/134 (53.73%), Postives = 96/134 (71.64%), Query Frame = -2 Query: 224 VILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 601 ++ +RL S+ N+ P+SLSR+ MK GK+ IAV+VG V DD+R +PAL+V ALRF+++AR RI AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+ ++G++ Sbjct: 47 LVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGKE 179
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31 Identity = 71/134 (52.99%), Postives = 94/134 (70.15%), Query Frame = -2 Query: 224 VILKRLFMSKVNKPPLSLSRLINFMK--------GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRK 601 V+ +RL S+ N+ P+SLSR+ MK K IAVVVG V DD+R +PA++V ALRF+++AR I AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY ++G++ Sbjct: 47 VVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGKE 179
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.076e-30 Identity = 77/129 (59.69%), Postives = 85/129 (65.89%), Query Frame = -2 Query: 218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFE 601 V+LKRL M + K PLSLS+L M+ + D AVVVGTVT+D R VP L V ALR TETAR RI +GGE LTFDQL R+P G LLRG AREAVKHF G P KPYVRSKGRKFE Sbjct: 47 VVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKGRKFE 171
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.768e-29 Identity = 74/129 (57.36%), Postives = 85/129 (65.89%), Query Frame = -2 Query: 218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKGRKFE 601 ++LKRL M + K PLSLS+L M+ + + AVV+GTVT D R VP L V ALR TETAR RI +GGE LTFDQL R+P+G LLRG AREAVKHF G P KPYVRSKGRKFE Sbjct: 47 IVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKGRKFE 171
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.686e-27 Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = -2 Query: 236 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 601 V+L+RLFMS+ ++PP+S+SR+I MK G+E++ AVVVGTVTDD+R +E+P LKV+AL+ T R RI K + + F LAL AP Q +VLL P+NAR+ +HF AP +P HTKPYV S Sbjct: 45 VVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14 Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = -2 Query: 431 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALR 601 V+LKRLFMS+ N+PPLSLSR+ MK G+E K AVVVGT+TDD+R EVP LKV ALR Sbjct: 46 VVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104 The following BLAST results are available for this feature:
BLAST of DN617828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617828 ID=DN617828; Name=DN617828; organism=Citrus sinensis; type=EST; length=602bpback to top |