DN617825

Overview
NameDN617825
Unique NameDN617825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7471 contig Csv1_Contig7471:12..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617825 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 48/167 (28.74%), Postives = 72/167 (43.11%), Query Frame = 2
Query:  158 KDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGT-------------ITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG 619
            K+V  K+   GIC +D+  + N+      PI+ GHE  G+V  VG  VS  K GDKV + C+   C  C++C     N C +V ++      +G              IT G +S+ +V  E  V ++ E A L+    + C   T +          PG    V G
Sbjct:   35 KEVRVKMVAAGICGTDIKSLDNKKLAPFCPIIMGHEGTGIVESVGEGVSTVKTGDKVIILCL-PQCGECNTCLNSKNNICKEVRLSGTHLTSEGNSRITCKGKTTYQYITTGTFSEYIVIKEISVAKVDEDALLEKACIIGCGFATGFGAAINSAKVSPGSTCAVFG 200          
BLAST of DN617825 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 49/170 (28.82%), Postives = 71/170 (41.76%), Query Frame = 2
Query:  161 DVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASK-----------------YHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG 619
            +V  K+   G+CH+D + +       ++P++ GHE  G V  VG  V+KFK GD V +   V  C  C  C     N C K+ +T                     +  GT T+  Y  T+VAD   + ++ E AP+D    L C   T Y         +PG    V G
Sbjct:   36 EVRIKLFATGVCHTDAYTLSGSDPEGLFPVILGHEGAGTVESVGEGVTKFKPGDTV-IPLYVPQCGECKFCKNPKTNLCQKIRITQGQGLLPDKTSRFTCKGKQVFHFMGTSTFSEY--TVVADIS-LAKVNEKAPMDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFG 201          
The following BLAST results are available for this feature:
BLAST of DN617825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ADH6_PERMA5.087e-1128.74Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADHX_SPAAU8.677e-1128.82Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617825 ID=DN617825; Name=DN617825; organism=Citrus sinensis; type=EST; length=621bp
GTCAAACTAAGCCAACAAGCACCAATATCATTAAATTCATTCTGAAATGG
GGCAAGCACCGGAGCAAGAGCACCCTAAGAACGCCTTTGGATGGGCTGCC
AGGGACACTTCTGGCGTTCTCTCCCCCTTTCACTTCTCCAGAAGAGCAAC
GGGAGAGAAGGATGTGACATTCAAAGTAACTCACTGTGGGATATGCCATT
CAGATCTTCACTTGATCAAAAATGAATGGGGCAATGCCATTTACCCAATC
GTCCCCGGACATGAGATTGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGT
GAGTAAATTCAAAGTCGGAGACAAAGTGGGAGTAGGATGCATGGTGGGAT
CATGCCGCTCTTGTGATAGCTGCGCCATTGATCTTGAGAACTACTGCCCC
AAAGTTATAATGACCTATGCCAGCAAGTACCATGATGGAACCATCACATA
CGGAGGCTACTCTGACACTATGGTTGCCGATGAGCACTTTGTGGTCCGTA
TTCCTGAAGGCGCACCACTTGACGCCACTGCCCCTCTCCTCTGTGCTGGT
ATCACAGTCTACAGTCCGTTGAGATTCTATGGACTCGACAAGCCTGGTAT
GCATGTGGGTGTTGTCGGCTT
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