DN617824

Overview
NameDN617824
Unique NameDN617824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:873..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.449e-38
Identity = 77/111 (69.37%), Postives = 89/111 (80.18%), Query Frame = -2
Query:  242 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 574
            D IIDT+SA H LMPL+GLLK  GKLV +G P KPLEL  FPL+ GRK++GGS IGG+KETQEM+DF  KHNI ADIE+I    +NTAMERL KADV+YRFVIDVAN+  S
Sbjct:  248 DYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANSFSS 358          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.294e-38
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = -2
Query:  239 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 574
            D IIDT+SAVH L+ L+GLLK  GKLV +G P KPL+LP FPL+ GRK++GGS  GGLKETQEM+DF  KHNI A+IE+I  D +NTA+ERL+KADV+YRFVIDVAN++ S+
Sbjct:  241 DYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQLPIFPLVAGRKLIGGSNFGGLKETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANSLSSS 352          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.938e-35
Identity = 74/109 (67.89%), Postives = 89/109 (81.65%), Query Frame = -2
Query:  248 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 574
            D IIDTVSA H L+PL  LLK  GKLV LG PEKPL+LP F L+ GRK+VGGS IGG+KETQEM++F AKH I +DIE+I    +N+AM+RLAK+DVRYRFVIDVAN++
Sbjct:  245 DFIIDTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.306e-35
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = -2
Query:  245 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 574
            DGII+TVSA  P+ PL+GLLK  GK++L+G PEKP+E+P F L+   K + GS IGG+ +T EMID AAKH + A+IEVI ADYVNTAMERLAKADVRYRFVID+ NT+K
Sbjct:  242 DGIINTVSANIPIAPLLGLLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTLK 350          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.618e-35
Identity = 73/109 (66.97%), Postives = 88/109 (80.73%), Query Frame = -2
Query:  248 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 574
            D IIDTVSA H L+PL  LLK  GKLV LG  EKPL+LP FPL+ GRK+VGGS IGG+KETQEM++F AKH I +DIE+I    +N+AM+RL K+DVRYRFVIDVAN++
Sbjct:  244 DFIIDTVSAEHALLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.063e-33
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  248 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 574
            DG+I+TVSA  P+ P + LLK  GK++L+G PE PLE+P F L+ G + + GS IGG+ +TQEMI+ AAKH + ADIEVI AD VNTAMERLAKADVRYRFVIDV NT+
Sbjct:  252 DGVINTVSANTPMAPYLALLKPNGKMILVGLPENPLEVPPFSLVHGNRTLAGSNIGGMADTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVRYRFVIDVGNTL 360          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.006e-32
Identity = 68/109 (62.39%), Postives = 87/109 (79.82%), Query Frame = -2
Query:  248 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 574
            DGIIDTVSAVH L PLI LL++ G+LV +G+P KP++L  +PL +  K V GS+IGG+++TQEM+DFA +H + A++EVI  + VN AMERL K DVRYRFVIDVANTM
Sbjct:  250 DGIIDTVSAVHDLTPLITLLRTHGQLVPVGSPGKPVQLALYPLQSDGKSVAGSMIGGMRDTQEMVDFAVEHGVAAEVEVIGMEDVNGAMERLQKGDVRYRFVIDVANTM 358          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = -2
Query:  242 GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 571
            GII+T SA   +   + LLK +GK++L+G PEKPL++P F L+ G KI+ GS +G + ETQEMIDFAA+H + ADIE+I AD VNTAMERLAK DVRYRFV+D+ NT++S
Sbjct:  269 GIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTLRS 378          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.835e-32
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = -2
Query:  245 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 574
            D IIDTV+A H L P++ LLK  GKLVL+GAPEKP+ELP+FPL+ G++ V GS+ GG+KETQEM+D   +HNI  DIE++  D +N A+ RLA+ DVRYRFVI+V    K
Sbjct:  250 DYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVRYRFVINVGGDSK 359          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = -2
Query:  251 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 574
            DGI++TVSA HP+ PL  L+K   ++V +GAP +PLELPA+ ++ G K + G+ +GG+++ Q M+DFA +H I A++EVI  DYVNTAMERL K DVRYRFVIDVA +
Sbjct:  319 DGILNTVSAWHPVAPLFALMKPMAQMVFVGAPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGS 426          
The following BLAST results are available for this feature:
BLAST of DN617824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
MTDH_MEDSA5.449e-3869.37Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH1_STYHU9.294e-3866.96Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH2_ARATH1.938e-3567.89Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH5_ORYSJ3.306e-3566.36Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ARATH9.618e-3566.97Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH3_ORYSJ1.063e-3364.22Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH9_ORYSJ2.006e-3262.39Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH7_ORYSJ3.421e-3260.00Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH6_ORYSJ5.835e-3259.09Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CAD8B_ORYSJ2.452e-3056.48Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617824 ID=DN617824; Name=DN617824; organism=Citrus sinensis; type=EST; length=575bp
CTTTTTAATCAAAACCTGAATAATTAATTTCAGTAAAAACTAACATATAG
CTCGCTATTACATAAATTTGTCACACAGATGGAATATATGTCACGAAATT
ATTATTCTTAAAAAGTAAAAACAGTTTTGAAATCACAACAAAAGACTAAC
ATAATCTAAAACTTAGACGATGTTGTGACTCAACAATAAACGCACATTCC
TCGTTTTAAGCGCAACTCAAAAGGGAGAAAATTTAAGGAGTGGACTTCAT
TGTGTTTGCAACGTCGATGACAAAGCGATATCTAACATCGGCTTTAGCAA
GGCGCTCCATGGCTGTGTTCACATAGTCGGCCGGTATGACCTCAATATCA
GCTCTGATGTTGTGTTTTGCTGCAAAATCAATCATCTCTTGAGTCTCCTT
CAACCCCCCAATGAGACTGCCACCAACTATCTTCCTCCCCGTGAGCAGGG
GGAAAGCTGGTAGCTCTAGTGGCTTCTCGGGTGCACCAAGAAGTACAAGC
TTTCCTTGAGATTTCAACAGTCCAATCAACGGCATTAGCGGGTGAACTGC
AGATACTGTATCGATGATACCATCC
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