DN617824

Overview
NameDN617824
Unique NameDN617824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:873..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 62/109 (56.88%), Postives = 83/109 (76.15%), Query Frame = -2
Query:  248 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 574
            DGIIDTVSA HPL+PL+ LLK +G++V++GAP  PL+LPA+ ++ G K V G+ +G + E Q M+DFA +H I AD+EV+  D VN A+ RL + DVRYRFV+DVA TM
Sbjct:  244 DGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAMPLQLPAYAIIEGGKRVAGNGVGSVAECQAMLDFAGEHGIAADVEVVAMDAVNAALGRLERNDVRYRFVVDVAGTM 352          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 60/108 (55.56%), Postives = 82/108 (75.93%), Query Frame = -2
Query:  251 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 574
            DGI++TVSA HP+ PL  L+K   ++V +G P +PLELPA+ ++ G K + G+ +GG+++ Q M+DFA +H I A++EVI  DYVNTAMERL K DVRYRFVIDVA +
Sbjct:  322 DGILNTVSAWHPIAPLFSLMKPMAQMVFVGGPTRPLELPAYAIVPGGKGITGNCVGGIRDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGS 429          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.112e-28
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = -2
Query:  248 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 574
            DGIIDTVSA HPL+PL+ LLK +G++V++GAP  PL+LPA  ++ G K V GS  G + E Q M+DFA +H I AD+EV+    VN A+ RL + DVRYRFVIDVA T+
Sbjct:  244 DGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAAPLQLPAIAIIDGGKRVAGSGGGSVAECQAMLDFAGEHGIAADVEVVAMGDVNAALGRLERNDVRYRFVIDVAGTL 352          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.487e-27
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  251 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 574
            D I+DT+   HPL P + LLK+ GKLV+LG   +PL     PL+ GR+ + GS IGG++ETQE +DF A+  + + IEV+  DY+NTAMERL K DVRYRFV+DVA +
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPPLILGRRSIAGSFIGGMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.161e-26
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = -2
Query:  251 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 574
            D I+DT+   HPL P + LLK+ GKLV+LG   +PL      L+ GR+ + GS IG ++ETQE +DF A+  + + IEV+  DY+NTAMERL K DVRYRFV+DVA +
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVARS 353          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-25
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = -2
Query:  251 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 574
            D I+DT+   HPL P + LLK+ GKLV+LG   +PL      L+ GR+ + GS IG ++ETQE +DF A+  + + IEV+  DY+NTAMERL K DVRYRFV+DVA +
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLEKNDVRYRFVVDVAGS 353          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-25
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = -2
Query:  257 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 574
            D I+DT+   HPL P + LLK+ GKLV+LG   +PL      L+ GR+ + GS IG ++ETQE +DF A+  + + IEV+  DY+NTAMERL K DVRYRFV+DVA
Sbjct:  246 DYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLDFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVA 351          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.392e-25
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = -2
Query:  251 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 574
            D IIDTV   HPL P + LLK  GKL+L+G    PL+  +  ++ GRK + GS IG +KET+EM+DF  +  I + IEV+  DY+NTA ERL K DVRYRFV+DVA +
Sbjct:  247 DYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMVMLGRKAITGSFIGSMKETEEMLDFCNEKGITSTIEVVKMDYINTAFERLEKNDVRYRFVVDVAGS 354          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.818e-25
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = -2
Query:  251 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 574
            D IIDTV  VHPL P + LLK  GKL+L+G    PL+     ++ GRK + GS IG +KET+EM++F  +  + + IEVI  DY+NTA ERL K DVRYRFV+DVA +
Sbjct:  246 DYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFCKEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGS 353          
BLAST of DN617824 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = -2
Query:  260 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 574
            D IIDTV   HPL P + LLK  GKL+L+G    PL+  +  ++ GRK + GS IG +KET+EM+DF  +  + + IE++  DY+NTAMERL K DVRYRFV+DV
Sbjct:  246 DYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFISPMVMLGRKSITGSFIGSMKETEEMLDFCKEKGVTSQIEIVKMDYINTAMERLEKNDVRYRFVVDV 350          
The following BLAST results are available for this feature:
BLAST of DN617824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CAD8D_ORYSJ5.462e-3056.88Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CAD8C_ORYSJ5.462e-3055.56Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8A_ORYSJ5.112e-2856.88Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH_PINTA1.487e-2753.70Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH2_PICAB8.161e-2651.85Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH_PINRA1.066e-2551.85Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH7_PICAB1.066e-2552.83Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH1_ARACO1.392e-2552.78Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH_POPDE1.818e-2552.78Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH1_TOBAC3.101e-2552.38Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617824 ID=DN617824; Name=DN617824; organism=Citrus sinensis; type=EST; length=575bp
CTTTTTAATCAAAACCTGAATAATTAATTTCAGTAAAAACTAACATATAG
CTCGCTATTACATAAATTTGTCACACAGATGGAATATATGTCACGAAATT
ATTATTCTTAAAAAGTAAAAACAGTTTTGAAATCACAACAAAAGACTAAC
ATAATCTAAAACTTAGACGATGTTGTGACTCAACAATAAACGCACATTCC
TCGTTTTAAGCGCAACTCAAAAGGGAGAAAATTTAAGGAGTGGACTTCAT
TGTGTTTGCAACGTCGATGACAAAGCGATATCTAACATCGGCTTTAGCAA
GGCGCTCCATGGCTGTGTTCACATAGTCGGCCGGTATGACCTCAATATCA
GCTCTGATGTTGTGTTTTGCTGCAAAATCAATCATCTCTTGAGTCTCCTT
CAACCCCCCAATGAGACTGCCACCAACTATCTTCCTCCCCGTGAGCAGGG
GGAAAGCTGGTAGCTCTAGTGGCTTCTCGGGTGCACCAAGAAGTACAAGC
TTTCCTTGAGATTTCAACAGTCCAATCAACGGCATTAGCGGGTGAACTGC
AGATACTGTATCGATGATACCATCC
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