DN617822

Overview
NameDN617822
Unique NameDN617822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617822_ssr297 microsatellite DN617822_ssr297:297..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10452 contig Csv1_Contig10452:82..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617822 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = -1 
Query:  394 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 549
            A+  LG+K V G+ RVT++R +N+L  +S P+V+KSP S+ Y++FGEAK+ED
Sbjct:   33 ALEGLGLKRVQGIQRVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVED 84
The following BLAST results are available for this feature:
BLAST of DN617822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_CRYNE8.065e-1151.92Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617822 ID=DN617822; Name=DN617822; organism=Citrus sinensis; type=EST; length=594bp
TTTTTTTTTTTTTGTATCTGCAACAGAAATTGTATTAAGTGCACAAAAAT
AGAGTAGTAATTCAGTCATCTCACCGACTACAATAACTAAATTCATCGAC
AGAAAAATACTGCATGGAAGCAAATCTACTCAAGTAGTAAGCTCCATGAT
AGCACTAACAATGTCTCCATTATGTGTCTTCAGAGCTTTGACAGCCTTGC
TTCTTGAGACACCAGCCTGTGTCATGACCAAATCAATGTCCCGAGGCTCA
ACTCCCGTCTCATCAACTTCCTCCTCTTCCTCATCTTGTTGTGCACCAGC
AGCAGCAGAAGAGGCATCTGGTTTCGCCATCACCGATCCCATGTCAGGCA
TCCTGAACTGCTGGGCAGCCTGTGTCTGCAGCTGGGTGCTCAAATCCTCT
ATTTTGGCTTCCCCAAATATGACGTATGTTTCAGAATTTGGGCTCTTGAA
AACATCAGGCTTTGAGATGAAAAATAGTATATTTTTGGTTCTCTTGATGG
TTACCCTGCTAACTCCTGTTACAGGTTTCATGCCCAACTTCAGCATTGCC
TTGCGGCTCTTTTTCTCACTTCTGCTCTGCTTTGAACTCCCACC
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