DN617817

Overview
NameDN617817
Unique NameDN617817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617817_ssr152 microsatellite DN617817_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1261..1854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  229 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 507
            +P   GE  + C+ +SS+P V+  +GGK + L+P +Y L+V +     C+SGF   D+ PP GPLWILGDVF+GRY+TVFD     +G AEAA
Sbjct:  296 VPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  232 PSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 504
            P   GE  V+CD + S+P +SFT+GG+V+ L   +Y+L+V +     C+SGF   D+  P GPLWILGDVFMG+Y+TVFD     +GFA+A
Sbjct:  305 PLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.466e-20
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  229 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 507
            +P   GE  + C+ +SS+P ++F +GG+ ++L P +Y+L+V +     C+SGF   D+ PP GPLWILGDVF+G Y+TVFD     +GFA+AA
Sbjct:  313 VPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPEKYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAA 405          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.267e-20
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  229 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 507
            +P   GE  + C+ + S+P+V+ T+GGK + L+   Y L+V +     C+SGF   D+ PP GPLWILGDVF+GRY+TVFD     +G AEAA
Sbjct:  253 VPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVGLAEAA 345          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.266e-20
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = -3
Query:  238 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFA 495
            NG+  VDC  L+ MP V+FTI G  + + P +Y L+ G GV   C SGF   D+ PP GPLWILGDVF+G+Y++VFD GN  +G A
Sbjct:  303 NGDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGGV---CSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.572e-20
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  232 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 507
            +P   GE  +DC  + ++P +SF +GGK + L   +YVL+  +G    C+SG    ++ PP GPLWILGDVF+G+Y+TVFD  +  +GFA++
Sbjct:  304 IPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGFAKS 395          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.572e-20
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  235 PSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAE 504
            P   G+  + CD +SS+P V+  +GGK + L   +YV +V       C+SGF+  DV PP GPLWILGDVF+G Y+TVFD  N S+GFA+
Sbjct:  307 PLIKGQYVISCDKISSLPVVTLMLGGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGPYYTVFDRDNDSVGFAK 396          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.504e-20
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = -3
Query:  232 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 507
            +P   GE  + C+ +S++P+V+  +GGK++ L+  +Y L+V +G    C+SGF   D+ PP GPLWILGDVF+G Y+TVFD     +G A+A
Sbjct:  316 VPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.621e-19
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = -3
Query:  238 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFA 495
            NG+  VDC  L+ MP ++FTI G  + + P +Y L+  +GV   C SGF   D++PP GPLWILGDVF+G+Y++VFD GN  +G A
Sbjct:  303 NGDYEVDCTVLNKMPTMTFTINGIGYQMTPQQYTLQDDDGV---CSSGFQGLDISPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = -3
Query:  232 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVL-EVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 495
            +GE AVDC  L+ MPNV+F I G  + L+P  Y+L ++ +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN  +G A A
Sbjct:  309 DGEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQF-CGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLAPA 396          
The following BLAST results are available for this feature:
BLAST of DN617817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CATD_BOVIN1.326e-2148.39Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_CHIHA2.262e-2149.45Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_RAT1.466e-2046.24Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_PIG3.267e-2047.31Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
CATEA_XENLA4.266e-2052.33Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATD_CLUHA5.572e-2043.48Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHICK5.572e-2048.89Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_CANFA9.504e-2044.57Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATEB_XENLA1.621e-1950.00Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CATE_RAT6.811e-1849.44Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617817 ID=DN617817; Name=DN617817; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTGGTTTAATAGTAGAATGGCATTATGCTTTTAAACCTAAACCG
CACGGTTTAATAACCTTTCCGGATTCTAATAAAGTCCGATCCTGGACTGG
ATTATGATACACACACAGAGACACAAACACACACATATATATACACATAT
ATATGTATGTATGCATGTGTATATAATTATTACAACAAGCTAGTTATGGA
AATGGACGAAGCCAGTGGATTTTGTTCAAGCTGCTTCGGCGAATCCAATA
GACAAGTTGCCGTAGTCGAACACAGTGTGATAGCGACCCATGAAAACATC
TCCCAGAATCCAGAGAGGACCACGAGGAGGGGCCACATCGAAAGCAGTAA
ATCCACTGATGCATTGGGCTGCAACTCCCTCTCCCACTTCAAGAACATAC
TCATTCGGTGCAAGGTCAAATACTTTGCCACCAATTGTAAATGAAACATT
GGGCATGGAAGATAAATTGTCACAATCAACAGCTGATTCTCCATTTGGAC
TGGGCAGACGGTCACAAAGCTGATTTACATAATTCAAGATTTGATCTGCT
GTCTCATTTCTCCTCAGCTTGTTCTGCATCCATATGACCGCCATCT
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