DN617817

Overview
NameDN617817
Unique NameDN617817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = -3
Query:  232 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 495
            +GE AV+C NL+ MP+V+FTI G  + L+P  Y +L+  +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN  +G A A
Sbjct:  312 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQF-CSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPA 399          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.588e-17
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  232 NGESAV-DCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 495
            NGE    DC  ++++PNV+ T+ G+ F L P EYVLEV E    +C+SGF   ++    G  WILGDVF+  Y+TVFD+GN  +GFA A
Sbjct:  294 NGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIEL--NMGNFWILGDVFISAYYTVFDFGNKQVGFATA 380          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3
Query:  232 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVL-EVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 495
            +GE AVDC  L +MPNV+F I    + L P +Y+L ++ +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN  +G A A
Sbjct:  308 DGEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQF-CGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGNNQVGLAPA 395          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.531e-17
Identity = 45/65 (69.23%), Postives = 49/65 (75.38%), Query Frame = -3
Query:  229 VFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 423
            VF L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL +GFAEAA
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 265          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            NGE  V C  ++++PN+ FTI G  + L P+ YVL+  +G    C SGF   D+    G LWILGDVF+ +Y TVFD GN  +G A  A
Sbjct:  302 NGEMVVSCSAINTLPNIVFTINGVQYPLPPSAYVLQSQQG----CTSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRGNNQVGLAPVA 386          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  232 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLS----IGFAEA 507
            +P   GE  + C  +  +P VSF +GG  F+L  ++YV++        C+SGF A DV PP GP WILGDVF+G Y  VFD G++     +G A A
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = -3
Query:  229 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 420
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL +GFAEAA
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 266          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = -3
Query:  229 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 420
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL +GFAEAA
Sbjct:  222 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 281          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = -3
Query:  229 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 420
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL +GFAEAA
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 224          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = -3
Query:  244 VNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIG 528
            +N+     P  NG+  + C    ++P VSF +GG  F+L   +YV+++ +     C+ GF A D+  P GPLWILGDVF+G Y  VFD G+ ++G
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
The following BLAST results are available for this feature:
BLAST of DN617817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CATE_HUMAN1.517e-1749.44Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATD_DICDI2.588e-1748.31Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
CATE_MOUSE5.766e-1748.31Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
CARDH_CYNCA7.531e-1769.23Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PEPA_RHIFE2.191e-1646.07Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
NAPSA_HUMAN2.191e-1642.71Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CARDG_CYNCA2.191e-1668.75Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDF_CYNCA2.191e-1668.75Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA2.191e-1668.75Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
NAPSA_MOUSE3.738e-1640.00Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617817 ID=DN617817; Name=DN617817; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTGGTTTAATAGTAGAATGGCATTATGCTTTTAAACCTAAACCG
CACGGTTTAATAACCTTTCCGGATTCTAATAAAGTCCGATCCTGGACTGG
ATTATGATACACACACAGAGACACAAACACACACATATATATACACATAT
ATATGTATGTATGCATGTGTATATAATTATTACAACAAGCTAGTTATGGA
AATGGACGAAGCCAGTGGATTTTGTTCAAGCTGCTTCGGCGAATCCAATA
GACAAGTTGCCGTAGTCGAACACAGTGTGATAGCGACCCATGAAAACATC
TCCCAGAATCCAGAGAGGACCACGAGGAGGGGCCACATCGAAAGCAGTAA
ATCCACTGATGCATTGGGCTGCAACTCCCTCTCCCACTTCAAGAACATAC
TCATTCGGTGCAAGGTCAAATACTTTGCCACCAATTGTAAATGAAACATT
GGGCATGGAAGATAAATTGTCACAATCAACAGCTGATTCTCCATTTGGAC
TGGGCAGACGGTCACAAAGCTGATTTACATAATTCAAGATTTGATCTGCT
GTCTCATTTCTCCTCAGCTTGTTCTGCATCCATATGACCGCCATCT
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