DN617817

Overview
NameDN617817
Unique NameDN617817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617817_ssr152 microsatellite DN617817_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1261..1854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = -3
Query:  283 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGR 507
            +P   GE  + C+ +SS+P V+  +GGK + L+P +Y L+V +     C+SGF   D+ PP GPLWILGDVF+GR
Sbjct:  291 VPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIGR 365          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  232 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 495
            +GE AV+C+NL+ MP+V+F I G  + L+   Y L         C SGF   D+ PP GPLWILGDVF+ ++++VFD G+  +G A A
Sbjct:  307 DGEYAVECENLNIMPDVTFVINGVPYTLSATAYTLPDFVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRQFYSVFDRGSNRVGLAPA 394          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +GE  + C ++ S+P++ FTI G  + L+P+ Y+L+  +     C SGF   DV    G LWILGDVF+ +Y+TVFD  N  +G A  A
Sbjct:  301 DGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 385          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +GE  + C ++ S+P++ FTI G  + + P+ Y+L+   G+   C SGF   D++   G LWILGDVF+ +Y TVFD GN  IG A  A
Sbjct:  288 SGEVVISCSSIDSLPDIVFTINGVQYPVPPSAYILQ-SNGI---CSSGFEGMDISTSSGDLWILGDVFIRQYFTVFDRGNNQIGLAPVA 372          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +GE  V C  +SS+P++ FTI G  + + P+ Y+L+        CISGF   DV    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQS----QGSCISGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +GE  V C  +SS+P++ FTI G  + L P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +GE  V C  +SS+P++ FTI G  + L P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            NG+  V C ++ S+P++ FTI G  + L  + Y+L+  +     C SGF   D+  P G LWILGDVF+ +Y  VFD GN  +G A  A
Sbjct:  303 NGQMVVSCSSIQSLPDIVFTINGIQYPLPASAYILQNQQ----DCTSGFQGMDIPTPSGELWILGDVFIRQYFAVFDRGNNRVGLAPVA 387          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARP_ASPFU (Vacuolar protease A OS=Aspergillus fumigatus GN=pep2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  232 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 492
            G+ +++CD   S+P+++FT+ G  F + P +Y LEV       CIS F   D   P GPL ILGD F+ ++++V+D GN ++G A+A
Sbjct:  315 GQYSIECDKRDSLPDLTFTLAGHNFTIGPYDYTLEV----QGSCISSFMGMDFPEPVGPLAILGDAFLRKWYSVYDLGNNAVGLAKA 397          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +GE  V C  +SS+P++ FTI G  + + P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
The following BLAST results are available for this feature:
BLAST of DN617817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CATD_SHEEP4.881e-1646.67Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CATE_RABIT6.375e-1645.45Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPA_PIG7.049e-1541.57Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
PEPA_BOVIN1.202e-1442.70Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
PEPA2_MACFU1.570e-1443.82Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA_MACMU2.051e-1443.82Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA4_MACFU2.051e-1443.82Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_SUNMU2.678e-1441.57Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
CARP_ASPFU4.569e-1440.23Vacuolar protease A OS=Aspergillus fumigatus GN=pe... [more]
PEPA1_MACFU5.967e-1442.70Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617817 ID=DN617817; Name=DN617817; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTGGTTTAATAGTAGAATGGCATTATGCTTTTAAACCTAAACCG
CACGGTTTAATAACCTTTCCGGATTCTAATAAAGTCCGATCCTGGACTGG
ATTATGATACACACACAGAGACACAAACACACACATATATATACACATAT
ATATGTATGTATGCATGTGTATATAATTATTACAACAAGCTAGTTATGGA
AATGGACGAAGCCAGTGGATTTTGTTCAAGCTGCTTCGGCGAATCCAATA
GACAAGTTGCCGTAGTCGAACACAGTGTGATAGCGACCCATGAAAACATC
TCCCAGAATCCAGAGAGGACCACGAGGAGGGGCCACATCGAAAGCAGTAA
ATCCACTGATGCATTGGGCTGCAACTCCCTCTCCCACTTCAAGAACATAC
TCATTCGGTGCAAGGTCAAATACTTTGCCACCAATTGTAAATGAAACATT
GGGCATGGAAGATAAATTGTCACAATCAACAGCTGATTCTCCATTTGGAC
TGGGCAGACGGTCACAAAGCTGATTTACATAATTCAAGATTTGATCTGCT
GTCTCATTTCTCCTCAGCTTGTTCTGCATCCATATGACCGCCATCT
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