DN617817

Overview
NameDN617817
Unique NameDN617817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617817_ssr152 microsatellite DN617817_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1261..1854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  232 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 543
            Q+   +N       S NG+  +DC   SS+ +V+FT+ G  F L P +Y+LE     +  C+S F   D+  P GPL ILGD F+ +Y++++D G  ++G A A
Sbjct:  295 QLAEMLNAQIGAKKSWNGQFTIDCGKKSSLEDVTFTLAGYNFTLGPEDYILEA----SGSCLSTFMGMDMPAPVGPLAILGDAFLRKYYSIYDLGADTVGIATA 394          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            G+ AV C ++ ++P++ FTI G  + L  + Y+L+  EG    C SGF   D+    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 GQMAVSCSSIKNLPDIVFTINGIQYPLPASAYILQSQEG----CSSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRANNQVGLAPVA 387          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +G+  V C  +SS+P++ FTI G  + + P+ Y+L+  EG    CISGF   ++    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQ-SEG---SCISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  232 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 495
            NG+  +DC    S+P+++FT+ G  F + P +Y LEV    +  CIS F   D   P GPL ILGD F+ R+++V+D G  ++G A+A
Sbjct:  311 NGQYTIDCAKRDSLPDLTFTLSGHNFTIGPYDYTLEV----SGTCISSFMGMDFPEPVGPLAILGDSFLRRWYSVYDLGKGTVGLAKA 394          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            +GE  V C ++ S+PN+ FTI G  + +  + Y+LE  +     CISGF   ++    G LWILGDVF+ +Y TVFD  N  +G A AA
Sbjct:  303 DGEMIVSCSSMYSLPNIVFTINGVQYPVPASAYILEEDDA----CISGFEGMNLDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAAA 387          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            G+  + C  ++S+P++ FTI G  + L P+ Y+L+  +G    C+SGF   ++    G LWILGDVF+ +Y  VFD  N  +G A  A
Sbjct:  303 GQMVISCSAINSLPDIVFTINGIQYPLPPSAYILQSQQG----CVSGFQGMNLPTASGELWILGDVFIRQYFAVFDRANNQVGLAPVA 386          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  232 AVDCDNLSSMPNVSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 483
            +V C NL+ M +V+F I G  + L P  Y +L+  +G+   C +GF   ++ PP GPLWILGDVF+ +++ VFD GN  +G A A
Sbjct:  306 SVQCANLNMMLDVTFIINGVPYTLNPTAYTLLDFVDGMQV-CSTGFEGLEIQPPAGPLWILGDVFIRQFYAVFDRGNNRVGLAPA 389          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            GE  VDCD+  S+P  +F I G  F L+P+ Y+L        QC+ G  A  ++   G PLWILGDVF+  Y++VFD  N  +GFA  A
Sbjct:  304 GEFLVDCDSTESLPTFTFVINGVEFPLSPSAYILNTD----GQCMVGVEATYLSSQDGEPLWILGDVFLRAYYSVFDMANNRVGFAALA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: RENI2_MOUSE (Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  232 ESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
            E  V C  + ++P++SF +GG+ + L+  +YVL+        C     A D+ PP GP+W+LG  F+ +++T FD  N  IGFA A
Sbjct:  315 EYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 400          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: RENI1_MOUSE (Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = -3
Query:  232 ESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
            E  V+C  + ++P++SF +GG+ + L+  +YVL+        C     A D+ PP GP+W+LG  F+ +++T FD  N  IGFA A
Sbjct:  316 EYVVNCSQVPTLPDISFDLGGRAYTLSSTDYVLQYPNRRDKLCTLALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 401          
The following BLAST results are available for this feature:
BLAST of DN617817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CARP_NEUCR5.967e-1436.54Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
PEPA_SORUN7.793e-1442.05Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]
PEPA_HUMAN1.018e-1342.70Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
CARP_NANOT1.329e-1340.91Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]
PEPA3_RABIT1.736e-1342.70Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA_CANFA3.868e-1338.64Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]
CATE_CAVPO3.868e-1343.53Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
PEPC_RABIT6.597e-1343.82Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
RENI2_MOUSE8.616e-1337.21Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1[more]
RENI1_MOUSE8.616e-1337.21Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617817 ID=DN617817; Name=DN617817; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTGGTTTAATAGTAGAATGGCATTATGCTTTTAAACCTAAACCG
CACGGTTTAATAACCTTTCCGGATTCTAATAAAGTCCGATCCTGGACTGG
ATTATGATACACACACAGAGACACAAACACACACATATATATACACATAT
ATATGTATGTATGCATGTGTATATAATTATTACAACAAGCTAGTTATGGA
AATGGACGAAGCCAGTGGATTTTGTTCAAGCTGCTTCGGCGAATCCAATA
GACAAGTTGCCGTAGTCGAACACAGTGTGATAGCGACCCATGAAAACATC
TCCCAGAATCCAGAGAGGACCACGAGGAGGGGCCACATCGAAAGCAGTAA
ATCCACTGATGCATTGGGCTGCAACTCCCTCTCCCACTTCAAGAACATAC
TCATTCGGTGCAAGGTCAAATACTTTGCCACCAATTGTAAATGAAACATT
GGGCATGGAAGATAAATTGTCACAATCAACAGCTGATTCTCCATTTGGAC
TGGGCAGACGGTCACAAAGCTGATTTACATAATTCAAGATTTGATCTGCT
GTCTCATTTCTCCTCAGCTTGTTCTGCATCCATATGACCGCCATCT
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