DN617817

Overview
NameDN617817
Unique NameDN617817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617817_ssr152 microsatellite DN617817_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1261..1854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  229 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFAEAA 543
            Q L+ + Q        +G+  V+C+N+ ++P ++F I G  F L P+ YVL         C  G     +  P G PLWILGDVF+  Y++V+D GN  +GFA AA
Sbjct:  288 QYLSALQQATGAQLDQDGQMVVNCNNIQNLPTLTFVINGVQFPLLPSAYVLNNN----GYCTLGVEPTYLPSPTGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  238 YVNQLCDRLPSPNGESA---VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFA 531
            Y+N+L   + +  GE     V CD++SS+P ++F + G  F L+P+ Y+++  EG    C+ G  +  +    G PLWILGDVF+  Y+ VFD GN  +G A
Sbjct:  292 YLNELLQTIGAQEGEYGQYFVSCDSVSSLPTLTFVLNGVQFPLSPSSYIIQE-EG---SCMVGLESLSLNAESGQPLWILGDVFLRSYYAVFDMGNNRVGLA 389          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: RENI_CANFA (Renin OS=Canis familiaris GN=REN PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = -3
Query:  232 ESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
            E  V+C+ + ++P++SF +GG+ + L   +YVL+   G    C       DV PP GP+W+LG  F+ +++T FD  N  IGFA A
Sbjct:  317 EYVVNCNQVPTLPDISFHLGGRAYTLTSKDYVLQDPYGNEDLCTLALHGLDVPPPTGPVWVLGASFIRKFYTEFDRHNNRIGFALA 402          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            NGE  V C  +SS+P++ FTI G  + +  + Y+L+   G    C SGF   ++    G LWILGDVF+ +Y  VFD  N  +G A  A
Sbjct:  303 NGEMVVSCSAISSLPDIVFTINGIQYPVPASAYILQDEGG----CTSGFQGMNIPTAYGELWILGDVFIRQYFAVFDRANNQVGLAPVA 387          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = -3
Query:  229 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFAEAA 543
            Q ++ + Q         G+ AV+C+++ S+P ++F I G  F L P+ YVL         C  G     +    G PLWILGDVF+  Y++V+D GN  +GFA AA
Sbjct:  288 QFMSALQQATGAQQDQYGQLAVNCNSIQSLPTLTFIINGVQFPLPPSAYVLNTN----GYCFLGVEPTYLPSQNGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  238 YVNQLCDRLPSPNGESA---VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFA 531
            Y+++L   + +  GE     V CD++SS+P +SF + G  F L+P+ Y+++        C+ G  +  +    G PLWILGDVF+  Y+ +FD GN  +G A
Sbjct:  292 YLSELLQTIGAQEGEYGEYFVSCDSVSSLPTLSFVLNGVQFPLSPSSYIIQEDNF----CMVGLESISLTSESGQPLWILGDVFLRSYYAIFDMGNNKVGLA 389          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CARP_YEAST (Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = -3
Query:  232 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 492
            G+  +DC+   ++P++ F   G  F + P +Y LEV    +  CIS  T  D   P GPL I+GD F+ +Y++++D GN ++G A+A
Sbjct:  322 GQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEV----SGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 404          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            GE+ + C  + S+P++ FTI    + L  + Y+L+  +     C+SGF   ++    G LWILGDVF+ +Y TVFD  N  +G A AA
Sbjct:  304 GENIISCSAIDSLPDIVFTINNVQYPLPASAYILKEDD----DCLSGFDGMNLDTSYGELWILGDVFIRQYFTVFDRANNQVGLAAAA 387          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            GE  V C ++  +P ++F I G  F L+P+ Y+L  GE     C+ G  +  V+P  G P+WILGDVF+  Y++V+D  N  +GFA AA
Sbjct:  310 GEYFVSCSSIQDLPTLTFVISGVEFPLSPSAYILS-GENY---CMVGLESTYVSPGGGEPVWILGDVFLRSYYSVYDLANNRVGFATAA 394          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = -3
Query:  229 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFAEAA 495
            NG+  V+C+ +  MP ++F I G  F L P+ YV          C  G  A  +  P G PLWILGDVF+  Y++V+D  N  +GFA +A
Sbjct:  306 NGDFMVNCNYIQDMPTITFVINGSQFPLPPSAYVFNNN----GYCRLGIEATYLPSPNGQPLWILGDVFLKEYYSVYDMANNRVGFAYSA 391          
The following BLAST results are available for this feature:
BLAST of DN617817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PEPC_SORUN8.616e-1337.74Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]
PEPC_MOUSE1.125e-1238.24Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
RENI_CANFA1.470e-1238.37Renin OS=Canis familiaris GN=REN PE=2 SV=1[more]
PEPA_CALJA1.920e-1240.45Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPC_SUNMU3.274e-1236.79Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]
PEPC_RAT3.274e-1235.29Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
CARP_YEAST3.274e-1236.78Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4... [more]
PEPA1_RABIT5.585e-1238.64Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPC_CAVPO9.527e-1241.57Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]
PEPC_MONDO1.244e-1140.00Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617817 ID=DN617817; Name=DN617817; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTGGTTTAATAGTAGAATGGCATTATGCTTTTAAACCTAAACCG
CACGGTTTAATAACCTTTCCGGATTCTAATAAAGTCCGATCCTGGACTGG
ATTATGATACACACACAGAGACACAAACACACACATATATATACACATAT
ATATGTATGTATGCATGTGTATATAATTATTACAACAAGCTAGTTATGGA
AATGGACGAAGCCAGTGGATTTTGTTCAAGCTGCTTCGGCGAATCCAATA
GACAAGTTGCCGTAGTCGAACACAGTGTGATAGCGACCCATGAAAACATC
TCCCAGAATCCAGAGAGGACCACGAGGAGGGGCCACATCGAAAGCAGTAA
ATCCACTGATGCATTGGGCTGCAACTCCCTCTCCCACTTCAAGAACATAC
TCATTCGGTGCAAGGTCAAATACTTTGCCACCAATTGTAAATGAAACATT
GGGCATGGAAGATAAATTGTCACAATCAACAGCTGATTCTCCATTTGGAC
TGGGCAGACGGTCACAAAGCTGATTTACATAATTCAAGATTTGATCTGCT
GTCTCATTTCTCCTCAGCTTGTTCTGCATCCATATGACCGCCATCT
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