DN617817

Overview
NameDN617817
Unique NameDN617817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617817_ssr152 microsatellite DN617817_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1261..1854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: RENI_CALJA (Renin OS=Callithrix jacchus GN=REN PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = -3
Query:  232 VDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 480
            V C+   ++P++SF +GGK + L   +YV +        C     A D+ PP GP W LG  F+ +++T FD GN  IGFA A
Sbjct:  317 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRGNNRIGFALA 399          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CHYM_BOVIN (Chymosin OS=Bos taurus GN=CYM PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  232 ADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 549
            +  ILN + Q      +  GE  +DCDNLS MP V F I GK++ L P+ Y  +  +G    C SGF + +        WILGDVF+  Y++VFD  N  +G A+A
Sbjct:  284 SSDILN-IQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ-DQGF---CTSGFQSEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKA 380          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: RENI_SHEEP (Renin OS=Ovis aries GN=REN PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = -3
Query:  232 ESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 489
            E  V+C+ + ++P++SF +GGK + L   +YVL+      + C       D+ PP GP+W+LG  F+ +++T FD  N  IGFA A
Sbjct:  315 EYVVNCNQMPTLPDISFHLGGKAYTLTSADYVLQDPYNNIS-CTLALHGMDIPPPTGPVWVLGATFIRKFYTEFDRRNNRIGFALA 399          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = -3
Query:  232 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 492
            GE+ + C  + S+P++ FTI G  + L  + Y+L+  +     C SG    +V    G LWILGDVF+ +Y TVFD  N  +G A A
Sbjct:  304 GENVISCSAIDSLPDIVFTINGIQYPLPASAYILKEDD----DCTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = -3
Query:  232 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 492
            GE+ + C  + S+P++ FTI G  + L  + Y+L+  +     C SG    +V    G LWILGDVF+ +Y TVFD  N  +G A A
Sbjct:  304 GENVISCSAIDSLPDIVFTINGIQYPLPASAYILKEDD----DCTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CHYM_SHEEP (Chymosin OS=Ovis aries GN=CYM PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = -3
Query:  232 ADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 549
            +  ILN + Q      +  GE  +DCD+LSSMP V F I GK++ L P  Y  +  EG    C SGF   +        WILGDVF+  Y++VFD  N  +G A+A
Sbjct:  284 SSDILN-IQQAIGATQNQYGEFDIDCDSLSSMPTVVFEINGKMYPLTPYAYTSQ-EEGF---CTSGFQGEN----HSHQWILGDVFIREYYSVFDRANNLVGLAKA 380          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_CALJA (Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            G+  V+CD++ ++P ++F I G  F L P+ Y+L         C  G     ++     PLWILGDVF+  Y++VFD GN  +GFA AA
Sbjct:  304 GQFLVNCDSIQNLPTLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTYLSSQNSQPLWILGDVFLRSYYSVFDLGNNRVGFATAA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEP2B_GADMO (Pepsin-2B OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            GE   +C ++ S+P+++FTI G    L P+ Y+    EG  A C SG  +  V      LWI GDVF+  Y+T++D  N  +GFA AA
Sbjct:  241 GEMMGNCASVQSLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPC_HUMAN (Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  229 GESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFAEAA 492
            G+  V+C+++ ++P+++F I G  F L P+ Y+L         C  G     ++   G PLWILGDVF+  Y++V+D GN  +GFA AA
Sbjct:  304 GQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 388          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = -3
Query:  238 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRG-PLWILGDVFMGRYHTVFDYGNLSIGFA 495
            +G   V+C+++ SMP ++F I G    L P+ YVL         C  G     +  P G PLWILGDVF+  Y+TVFD     +GFA
Sbjct:  305 SGNFVVNCNSIQSMPTITFVISGSPLPLPPSTYVLNNN----GYCTLGIEVTYLPSPNGQPLWILGDVFLREYYTVFDMAANRVGFA 387          
The following BLAST results are available for this feature:
BLAST of DN617817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RENI_CALJA1.625e-1138.55Renin OS=Callithrix jacchus GN=REN PE=2 SV=1[more]
CHYM_BOVIN1.625e-1139.62Chymosin OS=Bos taurus GN=CYM PE=1 SV=3[more]
RENI_SHEEP2.122e-1137.21Renin OS=Ovis aries GN=REN PE=2 SV=1[more]
PEPA4_RABIT2.772e-1139.08Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT2.772e-1139.08Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CHYM_SHEEP2.772e-1140.57Chymosin OS=Ovis aries GN=CYM PE=2 SV=1[more]
PEPC_CALJA4.728e-1139.33Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1[more]
PEP2B_GADMO4.728e-1139.77Pepsin-2B OS=Gadus morhua PE=1 SV=1[more]
PEPC_HUMAN6.175e-1138.20Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1[more]
PEPB_CANFA8.065e-1140.23Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617817 ID=DN617817; Name=DN617817; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTGGTTTAATAGTAGAATGGCATTATGCTTTTAAACCTAAACCG
CACGGTTTAATAACCTTTCCGGATTCTAATAAAGTCCGATCCTGGACTGG
ATTATGATACACACACAGAGACACAAACACACACATATATATACACATAT
ATATGTATGTATGCATGTGTATATAATTATTACAACAAGCTAGTTATGGA
AATGGACGAAGCCAGTGGATTTTGTTCAAGCTGCTTCGGCGAATCCAATA
GACAAGTTGCCGTAGTCGAACACAGTGTGATAGCGACCCATGAAAACATC
TCCCAGAATCCAGAGAGGACCACGAGGAGGGGCCACATCGAAAGCAGTAA
ATCCACTGATGCATTGGGCTGCAACTCCCTCTCCCACTTCAAGAACATAC
TCATTCGGTGCAAGGTCAAATACTTTGCCACCAATTGTAAATGAAACATT
GGGCATGGAAGATAAATTGTCACAATCAACAGCTGATTCTCCATTTGGAC
TGGGCAGACGGTCACAAAGCTGATTTACATAATTCAAGATTTGATCTGCT
GTCTCATTTCTCCTCAGCTTGTTCTGCATCCATATGACCGCCATCT
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