DN617813

Overview
NameDN617813
Unique NameDN617813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:852..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = -2
Query:  473 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 682
            G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  181 GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = -2
Query:  470 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 682
            G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  181 GLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = -2
Query:  473 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 682
            G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  181 GLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  467 PGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 664
            PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  227 PGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -2
Query:  470 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 682
            GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  188 GMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  467 GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 682
            G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  180 GLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
The following BLAST results are available for this feature:
BLAST of DN617813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
THI4_PYRHO3.699e-1251.43Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU8.241e-1249.30Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB1.836e-1151.43Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALWD3.132e-1146.97Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_AERPE3.132e-1149.30Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRKO9.112e-1145.83Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617813 ID=DN617813; Name=DN617813; organism=Citrus sinensis; type=EST; length=734bp
CTCAGATCTTCATCATTGATCTTAATCACATCAGCACTTTCCCATTGGCT
GATGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAG
GGCAGTCTTACACATAACACAGATAACAAGGACTAGATACGCAACTGCAA
ATTCACCTCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAAT
TAAAATTAAAGGTTCCATGATGGACCGGAAACAAACACTTTATTCACAAA
ACCTCACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACC
TAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGAT
GAGTGATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGA
ATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTAC
CGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCC
TTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGC
ACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAA
CCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGT
GCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTNCTTCACCTCTT
TACTCCAGTGGCCCCCAAAAGGCCCATCATGGCC
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