DN617806

Overview
NameDN617806
Unique NameDN617806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617806 vs. ExPASy Swiss-Prot
Match: ABC1_YEAST (Protein ABC1, mitochondrial OS=Saccharomyces cerevisiae GN=ABC1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.473e-27
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -2
Query:  176 FLYDEATKTINLIDFGAARAYPKSFVDEYLRMVVACANGDRESAIEMSRRLGFLTGMENVIMLDAHVQAAFIVGMPFA--KPGGYDFCANNITQSISNLGATMLRHRLTPPPDEAYSLHRKLSGAFLACIKIGAVVPCRELLLDVYEH 613
            FLY+  TK I L+DFGA+R + + F+ +Y +++      DR+ A EMS +LG+LTG+E+  M DAHV +   +G PF       +DF    ++  I      ML  RL PPP+E YSLHRK SG FL C ++GA V C +L  +++ +
Sbjct:  352 FLYNGRTKKIELLDFGASRPFAEDFILKYRKLLTYATLRDRKGAYEMSVQLGYLTGLESQSMKDAHVDSVLTLGEPFRGDVDKSFDFKDQTVSDRIRGNIGLMLNERLCPPPEETYSLHRKFSGIFLLCARMGASVHCAKLFKEIFAY 499          
BLAST of DN617806 vs. ExPASy Swiss-Prot
Match: ABKA_DICDI (Probable serine/threonine-protein kinase abkA OS=Dictyostelium discoideum GN=abkA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.545e-23
Identity = 60/137 (43.80%), Postives = 78/137 (56.93%), Query Frame = -2
Query:  224 FLYDEATKTINLIDFGAARAYPKSFVDEYLRMVVACANGDRESAIEMSRRLGFLTGMENVIMLDAHVQAAFIVGMPFAK-------PGGYDFCANNITQSISNLGATMLRHRLTPPPDEAYSLHRKLSGAFLACIKI 613
            F+ D   K INL+DFGA R Y   F+  YL+ +    N D    +E S +LG+LTG EN  M DA  ++  I+  PF+K          Y F    I + IS L  TML++RL PPP+E YSLHRKLSG +L C K+
Sbjct:  407 FVVDFENKRINLLDFGACRNYKSEFLFNYLKSIEGGVNRDINQILEYSLKLGYLTGDENKQMNDAQAKSILILSEPFSKLYYKENNLKTYPFNEKQIAKRISQLIPTMLKNRLKPPPEETYSLHRKLSGCYLVCSKL 543          
The following BLAST results are available for this feature:
BLAST of DN617806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ABC1_YEAST6.473e-2741.22Protein ABC1, mitochondrial OS=Saccharomyces cerev... [more]
ABKA_DICDI2.545e-2343.80Probable serine/threonine-protein kinase abkA OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617806 ID=DN617806; Name=DN617806; organism=Citrus sinensis; type=EST; length=614bp
TTTTTTTTTTTTTTTTGGGATTAAACAATTTCATACAATAATAGGGATGG
ATAATTGCATCCCAAACTTATTGCACGTGTACGAATCAATCAAAATTTTG
GAAACAAAACTGATTAGACTATGACGATATTGAGCCACTTGACAAGAACT
CATCACTCTCTTCACCGAACTGATAATGCTCGTATACATCTAGTAGTAAT
TCCCTACATGGGACAACTGCCCCGATCTTGATACAAGCTAAGAAAGCACC
AGAAAGCTTCCGATGAAGACTATAAGCCTCATCAGGGGGTGGTGTAAGCC
TGTGCCTAAGCATCGTTGCCCCAAGGTTTGAAATGCTTTGGGTTATATTG
TTGGCACAGAAGTCATAGCCACCTGGTTTTGCAAATGGCATTCCCACTAT
AAATGCAGCCTGAACATGAGCATCTAACATTATCACATTTTCCATTCCAG
TAAGGAACCCTAGTCTTCGAGACATCTCAATCGCTGATTCTCTGTCACCA
TTTGCACATGCAACAACCATTCTCAAATACTCATCAACGAAGCTTTTAGG
GTATGCCCGAGCTGCTCCAAAGTCGATGAGATTGATTGTTTTTGTAGCCT
CATCATATAAGAAG
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