DN617805

Overview
NameDN617805
Unique NameDN617805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.461e-43
Identity = 80/157 (50.96%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  228 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V EM  L+ +   I+DTTCP
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKDFSSVEEGDVVILPAFGATVHEMKLLHERGCHIIDTTCP 158          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 75/129 (58.14%), Postives = 99/129 (76.74%), Query Frame = 3
Query:  312 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEIIHNP+VN+RL EM V  I V  G+K F  V KGDVV+LPAFGA+VEEM  LN++   IVDTTCP
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGVAKGDVVILPAFGASVEEMQLLNDRECTIVDTTCP 131          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 72/151 (47.68%), Postives = 102/151 (67.55%), Query Frame = 3
Query:  258 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG----KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEIIHNP VN+ L  M ++ +  +E      K F+ V++ DVV+LPAFGA+ +EM  L+ KN  IVDTTCP
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDESGRRVPKDFERVSEKDVVILPAFGASTQEMQILDEKNCVIVDTTCP 152          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_THETN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter tengcongensis GN=ispH PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            +++ +AE  GFC+GV+RA++IAYE   +  + +++   EIIHNP V K LEE  V+ I  EE +K    + KGD +++ + G + +    L  K V+I+D TCP
Sbjct:    1 MEILIAEHAGFCFGVKRAIEIAYEELNKQKDTRLYTLGEIIHNPQVVKDLEEKGVRVIEEEELEK----LLKGDRLIIRSHGISKKLYEFLEQKGVEIIDVTCP 100          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_GEOSM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter sp. (strain M21) GN=ispH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            ++V LA+  GFC+GV+RA Q+A+EA     E   +    IIH+P V +RLEEM V  IPVE+  +    V  G  +++ + G A EE+      N+++VD TCP
Sbjct:    1 MQVILAKHAGFCFGVKRATQLAFEAADTGSE--TYTLGPIIHSPQVVQRLEEMGV--IPVEDVSE----VETGGTIIIRSHGVAAEELEAAVRANLEVVDATCP 96          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_THEPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter sp. (strain X514) GN=ispH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            +K+ +AE  GFC+GV+RA++ AY+  ++   +KI+   EIIHNP V   L +  V  I  EE     D + +GD +++ + G + +    L  K V+++D TCP
Sbjct:    1 MKILIAEYAGFCFGVKRAIETAYQEIEKGDGKKIYTLGEIIHNPQVISDLSKKGVNVIEEEE----LDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCP 100          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_THEP3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ispH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            +K+ +AE  GFC+GV+RA++ AY+  ++   +KI+   EIIHNP V   L +  V  I  EE     D + +GD +++ + G + +    L  K V+++D TCP
Sbjct:    1 MKILIAEYAGFCFGVKRAIETAYQEIEKGDGKKIYTLGEIIHNPQVISDLSKKGVNVIEEEE----LDKLTEGDKLIIRSHGVSKKLYDFLAKKGVEVIDVTCP 100          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_PELCD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 38/104 (36.54%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            +K+ LA+S GFC+GV+RA  +A++A +QF  E I     IIH+P V K+LEE  ++ I      ++ + ++ G  V++ + G   EE+  ++++ ++IVD TCP
Sbjct:    1 MKIILADSAGFCFGVKRATNLAFDAAEQF--EHICSLGPIIHSPQVVKKLEEKGIKVI------RKVEDIDHG-AVIIRSHGITAEELDIIHDRELKIVDATCP 95          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_PELPD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pelobacter propionicus (strain DSM 2379) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            ++V LA+  GFC+GV+RA Q+A+EA     ++K +    IIH+P V K+LEEM V+ +      K  D ++ G  +++ + G A  E+     K ++IVD TCP
Sbjct:    1 MRVILAKRAGFCFGVKRATQMAFEAAGM--DKKTYTLGPIIHSPQVVKKLEEMGVRAL------KDLDSMDSG-TIIIRSHGVASHEIAEAMQKKLEIVDATCP 95          
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_GEOBB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            ++V LA+  GFC+GV+RA Q+A++A     E   +    IIH+P V +RLEEM V  IPV+   +    V  G  +++ + G A EE+      N+++VD TCP
Sbjct:    1 MQVILAKHAGFCFGVKRATQLAFQAANIGSET--YTLGPIIHSPQVVQRLEEMGV--IPVDNVSE----VETGGTIIIRSHGVAAEELEAAVRANLEVVDATCP 96          
The following BLAST results are available for this feature:
BLAST of DN617805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ISPH_PROMA6.461e-4350.964-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY31.945e-3958.144-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI5.857e-3647.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THETN8.230e-1439.424-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOSM4.516e-1240.384-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEPX1.006e-1135.584-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEP31.006e-1135.584-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PELCD2.241e-1136.544-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PELPD3.823e-1137.504-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOBB4.993e-1138.464-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617805 ID=DN617805; Name=DN617805; organism=Citrus sinensis; type=EST; length=706bp
CCACGCTGTCCGCCAACTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGA
ATCTCCCTCATCATGGCGACGACTCTGCAGTTCTGCCGTGTTTGCGCGCG
AACTGACATAGGTTCGCGCCATAATAATCGCTCCGGAGCGCTGGCTCCGC
CGCGCCGGAGGCCTGTGATCGTCAGGTGCTCCGGTGAAAAATCGACGAGC
TCGGCGGCGGCTATTGGTGCCGAATTTGACGCGAAACTGTTTCGGCATAA
CTTGACGAGAAGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAG
AGACTTTGGAGCTCATGAATCAGGAGTACACAAGTGATATTATAAAGAAA
TTGAAGGAGAATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCT
GGCCGAATCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTG
CTTATGAAGCAAGAAAACAGTTTCCCGAGGAGAAGATCTGGATTACCAAT
GAAATCATACACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGT
TCAAAATATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTAAATA
AGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGAAATG
GTGACTCTGAATAACAAGAATGTACAGATTGTTGATACAACTTGCCCCTT
GGGTGT
back to top