DN617805

Overview
NameDN617805
Unique NameDN617805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617805 vs. ExPASy Swiss-Prot
Match: ISPH_CLOTE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium tetani GN=ispH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 32/104 (30.77%), Postives = 59/104 (56.73%), Query Frame = 3 
Query:  387 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 698
            + + LA+  GFC+GV+RAV    + ++ +P++ I+    +IHN  V   L+   + +I    G +  D + +GD+++L + G  +E +  L  K + I+D TCP
Sbjct:    1 MSIILAKKSGFCYGVKRAVDTCLKIKQNYPDKIIYTLGPLIHNNDVVDFLKTKNIFSI----GYENIDTLKEGDIIILRSHGVTLETIQKLKEKKLNIIDATCP 100
The following BLAST results are available for this feature:
BLAST of DN617805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ISPH_CLOTE8.517e-1130.774-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617805 ID=DN617805; Name=DN617805; organism=Citrus sinensis; type=EST; length=706bp
CCACGCTGTCCGCCAACTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGA
ATCTCCCTCATCATGGCGACGACTCTGCAGTTCTGCCGTGTTTGCGCGCG
AACTGACATAGGTTCGCGCCATAATAATCGCTCCGGAGCGCTGGCTCCGC
CGCGCCGGAGGCCTGTGATCGTCAGGTGCTCCGGTGAAAAATCGACGAGC
TCGGCGGCGGCTATTGGTGCCGAATTTGACGCGAAACTGTTTCGGCATAA
CTTGACGAGAAGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAG
AGACTTTGGAGCTCATGAATCAGGAGTACACAAGTGATATTATAAAGAAA
TTGAAGGAGAATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCT
GGCCGAATCATATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTG
CTTATGAAGCAAGAAAACAGTTTCCCGAGGAGAAGATCTGGATTACCAAT
GAAATCATACACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGT
TCAAAATATACCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTAAATA
AGGGTGATGTTGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGAAATG
GTGACTCTGAATAACAAGAATGTACAGATTGTTGATACAACTTGCCCCTT
GGGTGT
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