DN617804

Overview
NameDN617804
Unique NameDN617804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.746e-43
Identity = 81/141 (57.45%), Postives = 113/141 (80.14%), Query Frame = -1
Query:  164 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 586
            GKL E+TM++K+    +N+HF SFNTICDATQERQDAM ++VE  ++L++V+GG+NSSNT+ LQ+IA +R IPSY ID+ +RI  G+ I ++ ++G+L+  ENWLP G+I +GITSGASTPDK VEDV++K+F +K   AL
Sbjct:  261 GKLFERTMLQKYSPIELNQHFQSFNTICDATQERQDAMLELVEHNLNLMVVIGGFNSSNTTQLQQIAFERRIPSYHIDTVERIKSGDSIEHRQLNGQLITTENWLPDGEIVVGITSGASTPDKVVEDVIEKIFAVKATAAL 401          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.746e-43
Identity = 80/136 (58.82%), Postives = 112/136 (82.35%), Query Frame = -1
Query:  179 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 586
            GKL E TM+RK+G  +  +HF+SFNTICDATQERQDA++++V+E + L++V+GG+NSSNT+HLQEIA +R IPSY IDS +RI PGN+I +K +  +L+  +NWL +G+I +G+TSGASTPDK VE+V++K+F  K
Sbjct:  261 GKLFEHTMLRKYGPIDFKDHFMSFNTICDATQERQDAIFELVKEPLSLMVVIGGYNSSNTTHLQEIAIERAIPSYHIDSAERILPGNRIEHKPLGDDLIITDNWLNEGKIVVGVTSGASTPDKVVEEVIEKIFAFK 396          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 84/141 (59.57%), Postives = 108/141 (76.60%), Query Frame = -1
Query:  164 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 586
            GKL E TM++K+G  ++N HF+SFNTICDATQERQDAM  +V+EK+DL++V+GG+NSSNT+HLQEI+   GI SY IDS  RI   N I +K +  +L  KENWLP G+I +G+TSGASTPD  VE VL+K+F IK   A+
Sbjct:  261 GKLFEHTMLKKYGPLDLNNHFMSFNTICDATQERQDAMLDLVKEKLDLMVVIGGFNSSNTTHLQEISIHHGIVSYHIDSAARIDLNNHIEHKPLGKDLEVKENWLPDGKIVVGVTSGASTPDIVVEQVLQKIFAIKSAVAM 401          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.764e-42
Identity = 77/139 (55.40%), Postives = 112/139 (80.58%), Query Frame = -1
Query:  179 RDGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGE-LVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 592
            R GKL E+TMMR++G  N+ +HF+S +TICDATQERQDAM+K+VEE +DL++V+GG+NSSNT+HLQEIA +RG+PS+ ID   R+     I ++ +H + LV  +NWLP G++T+G+T+GASTPD+ V +V+ ++FE+K
Sbjct:  253 RIGKLFERTMMRRYGPANLADHFMSHDTICDATQERQDAMFKLVEEPLDLLVVIGGYNSSNTTHLQEIAVERGLPSFHIDGADRLVSAQFIEHRDLHSKSLVRTKNWLPAGEVTVGVTAGASTPDRVVAEVIARIFELK 391          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.154e-41
Identity = 83/139 (59.71%), Postives = 108/139 (77.70%), Query Frame = -1
Query:  170 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 586
            GKL E TM++K+G   +N+HF+SFNTICDATQERQDAM ++V+EK+DL++V+GG+NSSNT+HLQEI   +GI SY ID+  RI P N I +K +  +L  KENWLP+G I +GITSGASTPD  VE V++K+F  K  E
Sbjct:  261 GKLFEGTMLKKYGPAVINDHFMSFNTICDATQERQDAMLELVKEKLDLMVVIGGFNSSNTTHLQEIPIYQGITSYHIDNATRIKPNNCIEHKPLGKDLEIKENWLPEGSIVVGITSGASTPDIIVEAVIEKIFSAKELE 399          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.570e-41
Identity = 79/144 (54.86%), Postives = 115/144 (79.86%), Query Frame = -1
Query:  155 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 586
            G+L E+T++R++G  ++N+HF++FNTICDATQERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGIPS  ID+ +RIGPGN + +K +  +L   E +LP+G + IGITSGASTPD+ VE V+ ++ ++   EA Q+A
Sbjct:  261 GRLFERTLLRRYGPTDLNDHFLAFNTICDATQERQDAMFSLVDEPLDLMVVIGGYNSSNTTHLQEIAVSRGIPSVHIDAPERIGPGNAVEHKPLGQDLERLEPFLPEGDLRIGITSGASTPDRVVEGVIDRLLQL--AEAGQIA 402          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_PROM4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=ispH PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.276e-40
Identity = 78/141 (55.32%), Postives = 112/141 (79.43%), Query Frame = -1
Query:  167 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEA 586
            G+L EKTM+RK+G   + EHF++FNTICDAT+ERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +K +  +L+ ++N+LP+G I++GITSGASTPD+ VE V+ K+  +  E+A
Sbjct:  261 GRLFEKTMLRKYGPAELTEHFLAFNTICDATEERQDAMFSLVDEPLDLLVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGDQENTITHKPLGDDLITEKNFLPEGNISVGITSGASTPDRVVEHVIHKLINLSEEKA 401          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.666e-40
Identity = 76/138 (55.07%), Postives = 108/138 (78.26%), Query Frame = -1
Query:  173 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE 586
            G+L E+TM+ KFG   +NEHF++FNTICDATQERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA +RGI S+ ID+ +RI   N I +K +  EL+ +  +LP G +T+GITSGASTPD+ VE V++++  +  E
Sbjct:  261 GRLFERTMLSKFGPTQLNEHFLAFNTICDATQERQDAMFSLVDEPLDLMVVIGGYNSSNTTHLQEIAINRGIRSFHIDTPERISADNSIEHKPLGQELIRELEFLPSGTVTVGITSGASTPDRVVEHVIQRLISLSEE 398          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.080e-39
Identity = 76/135 (56.30%), Postives = 107/135 (79.26%), Query Frame = -1
Query:  182 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 586
            G+L E+TM+ K+G  ++NEHF++FNTICDATQERQDAM+ +V+E VDL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RI   N I +K +  EL  +E +LP G +T+GITSGASTPD+ VE V++++  +
Sbjct:  261 GRLFERTMLSKYGPTDLNEHFLAFNTICDATQERQDAMFSLVDETVDLMVVIGGYNSSNTTHLQEIAVSRGIRSFHIDTPERIHTDNSIEHKPLGEELTVEELFLPSGPVTVGITSGASTPDRVVEHVIQRLIAL 395          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.080e-39
Identity = 77/136 (56.62%), Postives = 109/136 (80.15%), Query Frame = -1
Query:  182 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 586
            GK+ E+TM++KFG EN+N HF++FNTICDAT+ERQDAM+ +V+E +D+++V+GG+NSSNT+HLQEIA  + I S+ ID+ +RI    N I +K +  EL  K+N+LP G+I +GITSGASTPDK V DV++K+ +I
Sbjct:  261 GKVFERTMLKKFGPENLNSHFLAFNTICDATEERQDAMFSLVDEDLDILVVIGGFNSSNTTHLQEIAITKNISSFHIDTPERISVKENSIFHKPLGSELELKKNFLPSGKINVGITSGASTPDKVVADVIEKLIDI 396          
The following BLAST results are available for this feature:
BLAST of DN617804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
ISPH_NOSP72.746e-4357.454-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MICAN2.746e-4358.824-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP75.179e-4259.574-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI6.764e-4255.404-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP81.154e-4159.714-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR32.570e-4154.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM41.276e-4055.324-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW1.666e-4055.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS31.080e-3956.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS1.080e-3956.624-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617804 ID=DN617804; Name=DN617804; organism=Citrus sinensis; type=EST; length=595bp
TCTCTAGCTTCATATTGCACAAAAAATATAAATTTCAGATTACATGGGCA
CTGATAAAAGACCCGGCAGAGGGCTGTGTTTATAATTTTACAATATCTAG
TGATACAATCACATCGAAATTTATTGATAATGTGTATGTTTGGACCTCAG
TTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTCAAATACCTTTTTA
AGGACGTCTTCAACAGCCTTATCTGGGGTGGAGGCACCGGATGTTATACC
GATTGTGATCTGGCCTTTCGGCAGCCAATTTTCTTTCTCCACCAGCTCAC
CATGCATCAATTTATATGCTATTTTGTTTCCGGGACCTATTCTCTTCTCA
CTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTGCAATCTCTTGAAG
GTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACCAAGATAAGATCGA
CCTTTTCCTCAACCATCTTATACATTGCATCTTGTCGCTCTTGTGTAGCA
TCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGACATTTTCAACTCC
AAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCATCTCTTCT
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