DN617804

Overview
NameDN617804
Unique NameDN617804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 78/137 (56.93%), Postives = 108/137 (78.83%), Query Frame = -1
Query:  182 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAY-KLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 586
            G+L EKTM+++FG   +NEHF++ NTICDAT+ERQ AM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +  L  GEL+ +EN+L  G I++GITSGASTPD+ VEDV+ K+ +I
Sbjct:  261 GRLFEKTMLQRFGPAQLNEHFLAINTICDATEERQGAMFSLVDEPLDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 78/137 (56.93%), Postives = 108/137 (78.83%), Query Frame = -1
Query:  182 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAY-KLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 586
            G+L EKTM+++FG   +NEHF++ NTICDAT+ERQ AM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +  L  GEL+ +EN+L  G I++GITSGASTPD+ VEDV+ K+ +I
Sbjct:  261 GRLFEKTMLQRFGPAQLNEHFLAINTICDATEERQGAMFSLVDEPLDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.016e-37
Identity = 73/136 (53.68%), Postives = 106/136 (77.94%), Query Frame = -1
Query:  182 GKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 586
            G++ E+TM+ K+G  ++NEHF+++NTICDATQERQDAM+ +V+E +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+  RI    N I +K +  +L   + +LP G +T+GITSGASTPD+AVE V++K+  +
Sbjct:  261 GRMFERTMLSKYGPADLNEHFLAYNTICDATQERQDAMFSLVDEPLDLLVVIGGFNSSNTTHLQEIAVSRGIRSFHIDTPDRIDETTNSIEHKPLSEDLKRDQVFLPAGPVTVGITSGASTPDRAVEAVIEKLMRL 396          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_BORPE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella pertussis GN=ispH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ K++  + DL+LVVG  NSSN++ L+E+AE +G+ +Y ID    I P                  WL +G+ +IGIT+GAS P+  V+ V+++V E+
Sbjct:  202 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 291          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_BORPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella parapertussis GN=ispH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ K++  + DL+LVVG  NSSN++ L+E+AE +G+ +Y ID    I P                  WL +G+ +IGIT+GAS P+  V+ V+++V E+
Sbjct:  203 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 292          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_BORBR (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Bordetella bronchiseptica GN=ispH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ K++  + DL+LVVG  NSSN++ L+E+AE +G+ +Y ID    I P                  WL +G+ +IGIT+GAS P+  V+ V+++V E+
Sbjct:  203 ICYATQNRQDAV-KLLAPECDLVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPA-----------------WL-QGRRSIGITAGASAPEVLVQQVVERVREL 292          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_THETN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter tengcongensis GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 44/121 (36.36%), Postives = 73/121 (60.33%), Query Frame = -1
Query:  170 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 532
            +  + FNTIC+ATQ+RQ+A    + +KVD++ V+GG +SSNT  L++I E     +Y I+        ++I ++++            KG   IGIT+GASTPD  +E+V++K+  +K E+
Sbjct:  184 KELVYFNTICNATQKRQEAA-DALSKKVDVMFVIGGKHSSNTQKLRKICEKNCKNTYHIER------ADEITFEML------------KGHDIIGITAGASTPDYVIEEVIEKIKSLKGED 285          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_THEPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter sp. (strain X514) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = -1
Query:  170 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 523
            I FNTICDATQ+RQDA  ++  +KVD++ V+GG +SSNT  L++I E     ++ I+  + +             E+V       K    IG+T+GASTPD  +EDV+KK+  +K E+
Sbjct:  187 IFFNTICDATQKRQDAADEL-SKKVDVMFVIGGKHSSNTQKLKKICEKNCKNTFHIEDAEELTL-----------EMV-------KDHEIIGVTAGASTPDYVIEDVIKKIRFLKGED 285          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_THEP3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = -1
Query:  170 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 523
            I FNTICDATQ+RQDA  ++  +KVD++ V+GG +SSNT  L++I E     ++ I+  + +             E+V       K    IG+T+GASTPD  +EDV+KK+  +K E+
Sbjct:  187 IFFNTICDATQKRQDAADEL-SKKVDVMFVIGGKHSSNTQKLKKICEKNCKNTFHIEDAEELTL-----------EMV-------KDHEIIGVTAGASTPDYVIEDVIKKIRFLKGED 285          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_MARAV (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ispH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = -1
Query:  155 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 508
            IC ATQ RQDA+ K +    D++LVVG  NSSN++ L+E+AE  G P+Y ID   +I P                  WL  G+  IG+T+GAS P+  V DV+K++  +  EE ++++
Sbjct:  197 ICYATQNRQDAV-KQLAGDCDIMLVVGSPNSSNSNRLRELAERMGTPAYLIDEAAQIDPA-----------------WL-YGKKAIGVTAGASAPEVLVADVIKRLKALGGEEPVEVS 295          
The following BLAST results are available for this feature:
BLAST of DN617804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
ISPH_PROMT7.739e-3856.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM17.739e-3856.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS95.016e-3753.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_BORPE1.329e-1341.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_BORPA1.329e-1341.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_BORBR1.329e-1341.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THETN1.736e-1336.364-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEPX2.961e-1339.834-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEP32.961e-1339.834-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MARAV5.051e-1338.984-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617804 ID=DN617804; Name=DN617804; organism=Citrus sinensis; type=EST; length=595bp
TCTCTAGCTTCATATTGCACAAAAAATATAAATTTCAGATTACATGGGCA
CTGATAAAAGACCCGGCAGAGGGCTGTGTTTATAATTTTACAATATCTAG
TGATACAATCACATCGAAATTTATTGATAATGTGTATGTTTGGACCTCAG
TTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTCAAATACCTTTTTA
AGGACGTCTTCAACAGCCTTATCTGGGGTGGAGGCACCGGATGTTATACC
GATTGTGATCTGGCCTTTCGGCAGCCAATTTTCTTTCTCCACCAGCTCAC
CATGCATCAATTTATATGCTATTTTGTTTCCGGGACCTATTCTCTTCTCA
CTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTGCAATCTCTTGAAG
GTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACCAAGATAAGATCGA
CCTTTTCCTCAACCATCTTATACATTGCATCTTGTCGCTCTTGTGTAGCA
TCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGACATTTTCAACTCC
AAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCATCTCTTCT
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