DN617804

Overview
NameDN617804
Unique NameDN617804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_CLOPE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens GN=ispH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  182 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 547
            +   ++  ++FNTIC AT  RQ ++ ++ +E  DL+ V+GG NSSNT+ L EI +     SY I++ K +         L+  E V+          TIGIT+GASTPD  + +V+ K+ E+
Sbjct:  178 IVRASKEIVAFNTICSATDVRQKSVQELSKE-ADLVFVIGGKNSSNTTKLYEICKKECPKSYHIENVKELDE------SLLEDESVK----------TIGITAGASTPDWIINEVISKIKEL 282          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_CLOP1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ispH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  182 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 547
            +   ++  ++FNTIC AT  RQ ++ ++ +E  DL+ V+GG NSSNT+ L EI +     SY I++ K +         L+  E V+          TIGIT+GASTPD  + +V+ K+ E+
Sbjct:  178 IVRASKEIVAFNTICSATDVRQKSVQELSKE-ADLVFVIGGKNSSNTTKLYEICKKECPKSYHIENVKELDE------SLLEDESVK----------TIGITAGASTPDWIINEVISKIKEL 282          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_XYLFT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  182 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 514
            N IC ATQ RQDA+ ++  E  DL+LVVG  NSSN++ L E+A+  G+ SY IDS   I P            +++K +        IG+T+GAS P   V+ VL +++E+
Sbjct:  196 NDICYATQNRQDAVRELARE-CDLVLVVGSPNSSNSNRLSELAQREGVASYLIDSAAEIDP----------AWVIDKHH--------IGVTAGASAPQVLVDGVLARLYEL 287          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_XYLFM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Xylella fastidiosa (strain M12) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  182 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 514
            N IC ATQ RQDA+ ++  E  DL+LVVG  NSSN++ L E+A+  G+ SY IDS   I P            +++K +        IG+T+GAS P   V+ VL +++E+
Sbjct:  196 NDICYATQNRQDAVRELARE-CDLVLVVGSPNSSNSNRLSELAQREGVASYLIDSAAEIDP----------AWVIDKHH--------IGVTAGASAPQVLVDGVLARLYEL 287          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_XYLFA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Xylella fastidiosa GN=ispH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  182 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 514
            N IC ATQ RQDA+ ++  E  DL+LVVG  NSSN++ L E+A+  G+ SY IDS   I P            +++K +        IG+T+GAS P   V+ VL +++E+
Sbjct:  196 NDICYATQNRQDAVRELARE-CDLVLVVGSPNSSNSNRLSELAQREGVASYLIDSAAEIDP----------AWVIDKHH--------IGVTAGASAPQVLVDGVLARLYEL 287          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_XYLF2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Xylella fastidiosa (strain M23) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  182 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 514
            N IC ATQ RQDA+ ++  E  DL+LVVG  NSSN++ L E+A+  G+ SY IDS   I P            +++K +        IG+T+GAS P   V+ VL +++E+
Sbjct:  196 NDICYATQNRQDAVRELARE-CDLVLVVGSPNSSNSNRLSELAQREGVASYLIDSAAEIDP----------AWVIDKHH--------IGVTAGASAPQVLVDGVLARLYEL 287          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_CLOPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium perfringens (strain SM101 / Type A) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = -1
Query:  182 NEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 535
            ++  ++FNTIC AT  RQ ++ ++ +E  DL+ V+GG NSSNT+ L EI +     SY I++ K +         L+  E V+          TIGIT+GASTPD  + +V+ K+ E+
Sbjct:  182 SKEIVAFNTICSATDVRQKSVQELSKE-ADLVFVIGGKNSSNTTKLYEICKKECPKSYHIENVKELDE------SLLEDESVK----------TIGITAGASTPDWIINEVISKIKEL 282          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_VIBCH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio cholerae GN=ispH PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ +++ E+VD+++VVG  NSSN++ L+E+AE  G P Y ID  + I P                  W    Q+ IG+T+GAS P++ V  +L ++ E+
Sbjct:  198 ICYATQNRQDAV-RILAEQVDVMVVVGSKNSSNSTRLKELAEKLGTPGYLIDCPQDIDP-----------------EWFVDAQL-IGVTAGASAPEELVNQILDRIKEL 287          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_PSYIN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Psychromonas ingrahamii (strain 37) GN=ispH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.276e-12
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  191 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 508
            IC ATQ RQDA+ K + E+ DL+LVVG  NSSN++ LQE A   G+ +Y IDSEK I                 K  WL   ++ +G+T+GAS P+  V++V+ ++
Sbjct:  196 ICYATQNRQDAV-KALAERSDLVLVVGSTNSSNSNRLQEKASCVGVNAYLIDSEKDI-----------------KTEWLENVKV-VGVTAGASAPEVLVKEVIARL 282          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_VIBVY (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio vulnificus (strain YJ016) GN=ispH PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ ++ ++ VD+++VVG  NSSN++ L+E+AE  G P+Y  D  + I P                  W   G++ +G+T+GAS P++ V  +L ++ E+
Sbjct:  198 ICYATQNRQDAVRELAKD-VDVVVVVGSKNSSNSTRLKELAEKLGTPAYLTDCPQDIEP-----------------QWF-DGKVKVGVTAGASAPEELVNQILTRIKEL 287          
The following BLAST results are available for this feature:
BLAST of DN617804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
ISPH_CLOPE1.125e-1236.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOP11.125e-1236.074-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_XYLFT1.470e-1239.644-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_XYLFM1.470e-1239.644-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_XYLFA1.470e-1239.644-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_XYLF21.470e-1239.644-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOPS1.470e-1237.294-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_VIBCH1.920e-1238.534-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PSYIN4.276e-1241.514-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_VIBVY7.294e-1235.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617804 ID=DN617804; Name=DN617804; organism=Citrus sinensis; type=EST; length=595bp
TCTCTAGCTTCATATTGCACAAAAAATATAAATTTCAGATTACATGGGCA
CTGATAAAAGACCCGGCAGAGGGCTGTGTTTATAATTTTACAATATCTAG
TGATACAATCACATCGAAATTTATTGATAATGTGTATGTTTGGACCTCAG
TTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTCAAATACCTTTTTA
AGGACGTCTTCAACAGCCTTATCTGGGGTGGAGGCACCGGATGTTATACC
GATTGTGATCTGGCCTTTCGGCAGCCAATTTTCTTTCTCCACCAGCTCAC
CATGCATCAATTTATATGCTATTTTGTTTCCGGGACCTATTCTCTTCTCA
CTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTGCAATCTCTTGAAG
GTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACCAAGATAAGATCGA
CCTTTTCCTCAACCATCTTATACATTGCATCTTGTCGCTCTTGTGTAGCA
TCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGACATTTTCAACTCC
AAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCATCTCTTCT
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