DN617804

Overview
NameDN617804
Unique NameDN617804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_VIBVU (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio vulnificus GN=ispH PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ ++ ++ VD+++VVG  NSSN++ L+E+AE  G P+Y  D  + I P                  W   G++ +G+T+GAS P++ V  +L ++ E+
Sbjct:  198 ICYATQNRQDAVRELAKD-VDVVVVVGSKNSSNSTRLKELAEKLGTPAYLTDCPQDIEP-----------------QWF-DGKVKVGVTAGASAPEELVNQILTRIKEL 287          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_CHRSD (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=ispH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = -1
Query:  155 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 508
            IC ATQ RQDA+  +  E  DL+LVVG  NSSN++ L+E+AE  G P+Y ID+ ++I P                  WL      IGIT+GAS P+  V+ V++++  +  E   +LA
Sbjct:  197 ICYATQNRQDAVRGLASES-DLVLVVGSPNSSNSNRLRELAERTGTPAYLIDTAEQIRP-----------------EWLTDVS-AIGITAGASAPEVLVQAVIERLQSLGAEAPDELA 295          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH2_BURMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 OS=Burkholderia mallei GN=ispH2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ K +  + D+++VVG  NSSN+S L+E+AE RG+ +Y +D+ ++I P                  W+  G+  IG+T+GAS P+   + V+ ++ E+
Sbjct:  208 ICYATQNRQDAV-KFMAPQCDVVIVVGSPNSSNSSRLREVAEKRGVAAYMVDAPEQIDPA-----------------WV-AGKRRIGVTAGASAPEVLAQAVIARLREL 297          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH1_BURPS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Burkholderia pseudomallei GN=ispH1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ K +  + D+++VVG  NSSN+S L+E+AE RG+ +Y +D+ ++I P                  W+  G+  IG+T+GAS P+   + V+ ++ E+
Sbjct:  208 ICYATQNRQDAV-KFMAPQCDVVIVVGSPNSSNSSRLREVAEKRGVAAYMVDAPEQIDPA-----------------WV-AGKRRIGVTAGASAPEVLAQAVIARLREL 297          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH1_RHOPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1 OS=Rhodopseudomonas palustris GN=ispH1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQ A+ +M  + VDLILVVG  NSSN++ L+EI  + GIPSY I     + P                  WL  G+  +GIT+GAS P+  V+DV++ +  I
Sbjct:  191 ICYATQNRQSAVRQM-SKLVDLILVVGANNSSNSNRLREIGTEAGIPSYLIADGSELDPA-----------------WL-DGKKAVGITAGASAPEVLVDDVIEALRRI 280          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_MANSM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = -1
Query:  137 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA*TEVQT 514
            N IC AT  RQ A+ ++ E+  DL++VVG  NSSN++ L E+A   G+P+  ID    I P                 +WL KG  TIG+T+GAS P+  V+ V+ ++ E+  +   +L   E  T
Sbjct:  194 NDICYATTNRQQAVRELAEQS-DLVIVVGSKNSSNSNRLAELASRMGVPAKLIDDSNDIEP-----------------DWL-KGINTIGVTAGASAPEVLVQSVIARLKELGVDSVEELEGCEENT 300          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_AZOSB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Azoarcus sp. (strain BH72) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  191 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 508
            IC ATQ RQDA+ K +    D++ VVG  NSSN++ L+E+AE RG+P+Y +D+   I P                  W+  G+  IG+T+GAS P+  V +V++++
Sbjct:  196 ICYATQNRQDAV-KFMTPHADVVFVVGSKNSSNSNRLREVAELRGVPAYLVDNAAGIDPA-----------------WI-VGKRRIGVTAGASAPEVLVAEVIERL 282          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_RALSO (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Ralstonia solanacearum GN=ispH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 36/106 (33.96%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  191 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 508
            IC ATQ RQDA+ K +  +V++++VVG  NSSN++ L+E+AE  G+P+Y +D+ +++ P                  WL  G+  +G+T+GAS P++  + ++ ++
Sbjct:  209 ICYATQNRQDAV-KFMAPQVEVVIVVGSPNSSNSNRLRELAEKLGVPAYMVDTPEQVRP-----------------EWL-AGKRRVGLTAGASAPEELAQSIVDRL 295          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_THISH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  197 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLK 508
            IC ATQ RQDA+ ++  E  DL LVVG  NSSN++ L+EIAE  G+ +Y +D+  +I                 ++ WL +G+  +G+T+GAS P+  V++V++
Sbjct:  197 ICYATQNRQDAVKQLASE-CDLFLVVGSPNSSNSNRLREIAEKLGVEAYLVDNAGQI-----------------EDRWL-EGKTRVGVTAGASAPELLVQEVVE 281          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_VIBPA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio parahaemolyticus GN=ispH PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ ++  + VD+++VVG  NSSN++ L+E+AE  G P Y  D  + I P                  W  +G+  +G+T+GAS P++ V  +L+++ E+
Sbjct:  198 ICYATQNRQDAVRELAGD-VDVMVVVGSKNSSNSTRLKELAEKLGTPGYLTDCPEDIKP-----------------EWF-EGKTKVGVTAGASAPEELVNQILERIKEL 287          
The following BLAST results are available for this feature:
BLAST of DN617804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
ISPH_VIBVU7.294e-1235.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CHRSD7.294e-1238.984-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH2_BURMA7.294e-1236.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH1_BURPS7.294e-1236.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH1_RHOPA1.244e-1141.284-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MANSM1.625e-1135.714-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_AZOSB1.625e-1137.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_RALSO2.122e-1133.964-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THISH2.772e-1138.464-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_VIBPA3.620e-1135.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617804 ID=DN617804; Name=DN617804; organism=Citrus sinensis; type=EST; length=595bp
TCTCTAGCTTCATATTGCACAAAAAATATAAATTTCAGATTACATGGGCA
CTGATAAAAGACCCGGCAGAGGGCTGTGTTTATAATTTTACAATATCTAG
TGATACAATCACATCGAAATTTATTGATAATGTGTATGTTTGGACCTCAG
TTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTCAAATACCTTTTTA
AGGACGTCTTCAACAGCCTTATCTGGGGTGGAGGCACCGGATGTTATACC
GATTGTGATCTGGCCTTTCGGCAGCCAATTTTCTTTCTCCACCAGCTCAC
CATGCATCAATTTATATGCTATTTTGTTTCCGGGACCTATTCTCTTCTCA
CTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTGCAATCTCTTGAAG
GTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACCAAGATAAGATCGA
CCTTTTCCTCAACCATCTTATACATTGCATCTTGTCGCTCTTGTGTAGCA
TCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGACATTTTCAACTCC
AAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCATCTCTTCT
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