DN617804

Overview
NameDN617804
Unique NameDN617804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_VIBF1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  191 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 508
            IC ATQ RQDA+  M  + VD+++VVG  NSSN++ L+E++E  G  SY ID  + +                 KE WL + Q  +G+T+GAS P++ V  ++++V
Sbjct:  196 ICYATQNRQDAVRDMASQ-VDVMIVVGSKNSSNSNRLRELSEKLGTTSYLIDCPEDL-----------------KEEWLTE-QTKVGVTAGASAPEELVNQIIEQV 282          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_CLOAB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium acetobutylicum GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = -1
Query:  185 VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFE 547
            V+N     ISFNTIC+AT ERQ  + K +  KVD ++V+GG  SSNT+ L EI +     +  +++   I                  EN L      IG+T+GASTPD  +E+ + K+ E
Sbjct:  179 VKNRAIEVISFNTICNATSERQK-IAKDLSNKVDFMVVIGGKQSSNTTKLYEICKSNCNETIHVENSGEI-----------------PENILKNKNCVIGVTAGASTPDWIIEEAISKMSE 281          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_AZOSE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Azoarcus sp. (strain EbN1) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  182 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 508
            IC ATQ RQDA+ K +  +VD++ VVG  NSSN++ L+E+AE  G+P+Y +D+ + I P                  WL + +  +G+T+GAS P+  V+ V++++ E+
Sbjct:  196 ICYATQNRQDAV-KFMAPRVDVVFVVGSRNSSNSNRLREVAELLGVPAYLVDNAEGIEP-----------------IWL-EDKKRVGVTAGASAPEVLVDAVVERLKEL 285          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_TREDE (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Treponema denticola GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  185 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFE 517
            FNTIC AT +RQ A+ K+  E VD +LV+GG NS+NT  L + A D   P++ I+    I P    +Y +                  IG+T+GASTPD  +++V KK+ E
Sbjct:  198 FNTICPATSDRQAALKKLAYE-VDALLVIGGKNSANTKRLFQTAVDTKKPAWLIEDASEI-PKEIFSYSV------------------IGLTAGASTPDFIIDEVEKKLLE 288          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_SODGM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Sodalis glossinidius (strain morsitans) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  158 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQL 508
            IC AT  RQ+A+  +  +  D++LVVG  NSSN++ L E+A+  G P+Y IDS   I                 +E+WL +G  TIG+T+GAS PD  V+ V++++  +  E A +L
Sbjct:  196 ICYATTNRQEAVRSLAAD-ADVVLVVGSKNSSNSNRLSELAQRVGKPAYLIDSAGDI-----------------QESWL-QGTQTIGVTAGASAPDILVQQVIERLRLLGAEGAKEL 293          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_PROMH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Proteus mirabilis (strain HI4320) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = -1
Query:  155 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 508
            IC AT  RQ+A  ++ E + D++ VVG  NSSN++ L E+A+  G PSY IDS + I                  E W+    I +G+T+GAS PD  V+ VL ++     EE ++L+
Sbjct:  197 ICYATTNRQEAARELAE-RADVVFVVGSKNSSNSNRLAELAQRAGKPSYLIDSAEDI-----------------DEIWVSHANI-VGVTAGASAPDILVQQVLARLKAFGAEEVIELS 295          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_NITEU (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nitrosomonas europaea GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 41/116 (35.34%), Postives = 69/116 (59.48%), Query Frame = -1
Query:  161 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQ 508
            IC ATQ RQDA+ K+V+   DL++VVG  NSSN++ L E+A +  + +Y +D  +++                 +E+WL   +  IGIT+GAS P+  V+ VL+++ +I  +++ Q
Sbjct:  197 ICYATQNRQDAVKKLVK-LCDLVVVVGSPNSSNSNRLCEVARNENVEAYMVDQAEQL-----------------QESWLTNKR-CIGITAGASAPEILVQQVLERLEQIAAKQSNQ 293          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_HAHCH (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Hahella chejuensis (strain KCTC 2396) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = -1
Query:  155 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 508
            IC ATQ RQDA+ K +    D++LVVG  NSSN++ L+E+AE    P+Y ID    I P                 +W   G  ++G+T+GAS P+  V+ V++++ E+  E   ++A
Sbjct:  197 ICYATQNRQDAV-KELAATCDVVLVVGSVNSSNSNRLRELAERMQTPAYLIDGAHEIQP-----------------DWF-AGAASVGVTAGASAPEVLVQQVVQRLRELGGEAPAEIA 295          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_ALISL (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Aliivibrio salmonicida (strain LFI1238) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  191 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 508
            IC ATQ RQDA+  M  + VD+++VVG  NSSN++ L+E++E  G  SY ID  + +                 KE WL   Q  +G+T+GAS P++ V  ++++V
Sbjct:  196 ICYATQNRQDAVRDMAGQ-VDVMIVVGSKNSSNSNRLRELSEKLGTTSYLIDCPEEL-----------------KEEWL-TNQAKVGVTAGASAPEELVNQIIEQV 282          
BLAST of DN617804 vs. ExPASy Swiss-Prot
Match: ISPH_VIBFM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Vibrio fischeri (strain MJ11) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  191 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 508
            IC ATQ RQDA+  M  + VD+++VVG  NSSN++ L+E++E  G  SY ID  + +                 KE WL   Q  +G+T+GAS P++ V  ++++V
Sbjct:  196 ICYATQNRQDAVRDMASQ-VDVMIVVGSKNSSNSNRLRELSEKLGTTSYLIDCPEDL-----------------KEEWL-TDQAKVGVTAGASAPEELVNQIIEQV 282          
The following BLAST results are available for this feature:
BLAST of DN617804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
ISPH_VIBF13.620e-1137.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CLOAB3.620e-1136.364-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_AZOSE3.620e-1136.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TREDE4.728e-1138.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SODGM4.728e-1137.614-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMH4.728e-1136.444-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NITEU4.728e-1135.344-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_HAHCH4.728e-1135.594-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ALISL4.728e-1137.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_VIBFM6.175e-1137.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617804 ID=DN617804; Name=DN617804; organism=Citrus sinensis; type=EST; length=595bp
TCTCTAGCTTCATATTGCACAAAAAATATAAATTTCAGATTACATGGGCA
CTGATAAAAGACCCGGCAGAGGGCTGTGTTTATAATTTTACAATATCTAG
TGATACAATCACATCGAAATTTATTGATAATGTGTATGTTTGGACCTCAG
TTTACGCTAATTGCAAGGCTTCTTCACGCTTGATCTCAAATACCTTTTTA
AGGACGTCTTCAACAGCCTTATCTGGGGTGGAGGCACCGGATGTTATACC
GATTGTGATCTGGCCTTTCGGCAGCCAATTTTCTTTCTCCACCAGCTCAC
CATGCATCAATTTATATGCTATTTTGTTTCCGGGACCTATTCTCTTCTCA
CTATCGATCCAGTATGAGGGAATTCCACGGTCTTCTGCAATCTCTTGAAG
GTGTGAGGTATTGCTCGAGTTCCACCCACCAACAACCAAGATAAGATCGA
CCTTTTCCTCAACCATCTTATACATTGCATCTTGTCGCTCTTGTGTAGCA
TCACAAATTGTGTTGAAGCTTATGAAGTGTTCATTGACATTTTCAACTCC
AAATTTACGCATCATGGTCTTCTCGACTAGTTTTCCATCTCTTCT
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