DN617802

Overview
NameDN617802
Unique NameDN617802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PAT13_SOLTU (Patatin-13 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.603e-19
Identity = 57/147 (38.78%), Postives = 85/147 (57.82%), Query Frame = -2 
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            +L+LSLGTGT  + +  + A + +KWG  +W+       I  +    SS + D+++S +FQ   S++NYLR+Q++ LTG     D A+E NM+ LV+ G  LLK+ VS+           D   T EEAL  FAKLLS++ KLR  +
Sbjct:  254 LLLLSLGTGTNSEFDKTHTAQETAKWGALQWMLV-----IQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGETLLKKPVSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 384
[Close]
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PAT07_SOLTU (Patatin-07 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 57/147 (38.78%), Postives = 85/147 (57.82%), Query Frame = -2 
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            +L+LSLGTGT  + +  + A + +KWG  +W+       I  +    SS + D+++S +FQ   S++NYLR+Q++ LTG     D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ K R  +
Sbjct:  253 LLLLSLGTGTNSEFDKTHTAQETAKWGALQWMLV-----IQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKFRANK 383
[Close]
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 57/147 (38.78%), Postives = 85/147 (57.82%), Query Frame = -2 
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            +L+LSLGTGT  + +  + A + +KWG  +W+       I  +    SS + D+++S +FQ   S++NYLR+Q++ LTG     D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ K R  +
Sbjct:  254 LLLLSLGTGTNSEFDKTHTAQETAKWGALQWMLV-----IQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKFRANK 384
[Close]
BLAST of DN617802 vs. ExPASy Swiss-Prot
Match: PAT03_SOLTU (Patatin-03 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 57/147 (38.78%), Postives = 85/147 (57.82%), Query Frame = -2 
Query:  155 MLVLSLGTGTAKK-ELKYNAAKASKWGIFEWIYEDSNTPILDIYSDGSSDIVDFHVSALFQSCGSKDNYLRIQDDTLTGDAASVDIATEENMQRLVETGTKLLKEQVSRVNLETGRYEKVDGEVTNEEALAHFAKLLSEQLKLRCRQ 592
            +L+LSLGTGT  + +  + A + +KWG  +W+       I  +    SS + D+++S +FQ   S++NYLR+Q++ LTG     D A+E NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ K R  +
Sbjct:  254 LLLLSLGTGTNSEFDKTHTAQETAKWGALQWMLV-----IQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKFRANK 384
The following BLAST results are available for this feature:
BLAST of DN617802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT13_SOLTU1.603e-1938.78Patatin-13 OS=Solanum tuberosum PE=2 SV=1[more]
PAT07_SOLTU2.093e-1938.78Patatin-07 OS=Solanum tuberosum PE=2 SV=1[more]
PAT05_SOLTU2.093e-1938.78Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PAT03_SOLTU2.093e-1938.78Patatin-03 OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617802 ID=DN617802; Name=DN617802; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTATTTTAATAGTAATAATCTTATTAATTCGTAGA
GTCCAATTGGAAGCACTTTGTATCGGATTGATTACACATAAAAACATGCA
TGCGGAATCCTTATGCCTTACTCAAATAAAACGAGTTTCAAATTAAAAGA
CTTATTGGCGGCAGCGGAGCTTAAGTTGTTCAGAGAGTAATTTGGCAAAG
TGAGCAAGTGCTTCTTCATTTGTGACCTCTCCGTCGACCTTCTCATATCT
GCCAGTCTCCAGGTTCACCCTCGACACCTGCTCCTTCAACAACTTGGTTC
CAGTTTCCACAAGCCTTTGCATATTCTCCTCCGTGGCAATGTCAACAGAT
GCTGCATCACCAGTCAACGTGTCGTCCTGAATTCGAAGGTAGTTGTCCTT
GCTTCCGCAGGATTGAAAGAGAGCAGACACATGGAAATCAACAATATCGG
AGCTTCCATCAGAGTAGATGTCGAGTATTGGGGTATTGCTATCTTCATAG
ATCCATTCGAAAATGCCCCACTTGGAGGCTTTGGCTGCATTGTACTTCAA
TTCTTTCTTGGCTGTACCTGTGCCTAGTGATAGTACCAGCATA
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