DN617798

Overview
NameDN617798
Unique NameDN617798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617798 vs. ExPASy Swiss-Prot
Match: ERG7_YEAST (Lanosterol synthase OS=Saccharomyces cerevisiae GN=ERG7 PE=1 SV=4)

HSP 1 Score: 115.931 bits (289), Expect = 1.629e-25
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  189 FTYGTWFGVKGLVAAGMNYSNSSTIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLEAH 620
            FTY   F ++ L   G  Y NSST+RK C+FL+SKQ   GGWGES  S   +++S ++ ++S VV TAWA++AL+ A     +   + R    L N Q E+G++  E + GVFN +C I Y +YR +FPI ALG Y  R  E H
Sbjct:  591 FTYAGMFALEALHTVGETYENSSTVRKGCDFLVSKQMKDGGWGESMKS--SELHSYVDSEKSLVVQTAWALIALLFAEYPNKE--VIDRGIDLLKNRQEESGEWKFESVEGVFNHSCAIEYPSYRFLFPIKALGMY-SRAYETH 729          
BLAST of DN617798 vs. ExPASy Swiss-Prot
Match: ERG7_SCHPO (Lanosterol synthase OS=Schizosaccharomyces pombe GN=erg7 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = -3
Query:  213 FTYGTWFGVKGLVAAGMNYSNSSTIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEY 620
            FTY   F    L +AG  Y N    +KACEFLLSKQRP GGW ESY++C   VY+  E + S V  T WA+ ALI+A     D  P+ +  ++L+ SQ  +G + Q+ + G+FN+N  I+Y  Y+  F I+ LG++
Sbjct:  580 FTYAAMFATGSLASAGRYYENCPVQKKACEFLLSKQRPDGGWSESYMACVTGVYT--ETESSLVTQTGWALDALINA--KYPDRKPIEKGIKFLMASQKSDGSWQQKSMEGIFNKNVAIAYPNYKLYFSIYTLGKF 711          
BLAST of DN617798 vs. ExPASy Swiss-Prot
Match: ERG7_PNECA (Lanosterol synthase OS=Pneumocystis carinii GN=ERG7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.240e-24
Identity = 60/139 (43.17%), Postives = 79/139 (56.83%), Query Frame = -3
Query:  204 FTYGTWFGVKGLVAAGMNYSNSSTIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCR 620
            FTY T F ++ L      Y NS   R+AC+FL++KQ   GGW E Y SC   +++      S VV TAWA + L+ A     D TP+ R    +++ Q  NG++ QE I GVFN+NCMISY  Y+  F I ALG Y  R
Sbjct:  580 FTYATMFALESLSCVKDFYENSFHSRRACDFLVNKQEEDGGWSEGYQSCTDGIWTR-HPTGSQVVQTAWACIGLMYANYP--DETPIKRGINLIMSRQQPNGEWKQEAIEGVFNKNCMISYPNYKFNFTIKALGMYSKR 715          
BLAST of DN617798 vs. ExPASy Swiss-Prot
Match: SQHC_RHISN (Probable squalene--hopene cyclase OS=Rhizobium sp. (strain NGR234) GN=shc PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = -3
Query:  210 FTYGTWFGVKGLVAAGMNYSNSSTIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV-FNRNCMISYSAYRNIFPIWALGEYR 620
            + YGTW  +  L AAG+++ +   IRKA E+L+S Q   GGWGE  +S  +  YS  E   S    TAWA+L L+ AG  E +   + R   YL N+Q ENG + ++      F R   + Y  Y   FP+WAL  YR
Sbjct:  507 YIYGTWSVLCALNAAGIDHQDPM-IRKAVEWLVSIQSWDGGWGEDAIS-YRLDYSGYEQAPSTSSQTAWALLGLMAAG--EVEHPAVARGVNYLKNAQTENGLWDEQRYTATGFPRVFYLRYHGYSKFFPLWALARYR 640          
BLAST of DN617798 vs. ExPASy Swiss-Prot
Match: SQHC_BRAJA (Squalene--hopene cyclase OS=Bradyrhizobium japonicum GN=shc PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 53/138 (38.41%), Postives = 70/138 (50.72%), Query Frame = -3
Query:  210 FTYGTWFGVKGLVAAGMNYSNSSTIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV-FNRNCMISYSAYRNIFPIWALGEYR 620
            F YGTW  +  L  AG+ + +   IRKA ++L S Q   GGWGE  +S  +  Y   E   S    TAWA+LAL+ AG  E D   + R   YLI +Q E G + ++      F R   + Y  Y   FP+WAL  YR
Sbjct:  513 FIYGTWSVLCALNMAGVRHDDPM-IRKAADWLASIQNKDGGWGEDAVS-YRLDYKGWEAAPSTASQTAWALLALMAAG--EVDHPAVARGVEYLIATQNEKGLWDEQRYTATGFPRVFYLRYHGYSKFFPLWALARYR 646          
BLAST of DN617798 vs. ExPASy Swiss-Prot
Match: SQHC_ALIAD (Squalene--hopene cyclase OS=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) GN=shc PE=1 SV=4)

HSP 1 Score: 76.2554 bits (186), Expect = 1.430e-13
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = -3
Query:  210 FTYGTWFGVKGLVAAGMNYSNSSTIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV-FNRNCMISYSAYRNIFPIWALGEYR 620
            + YGT   V  L A G++ +    I+KA +++   Q P GGWGE   S +   Y+      S    TAWA++ALI  G+AE++     R  +YL+ +Q  +G + +    G  F  +  + Y+ YR++FP  ALG Y+
Sbjct:  493 YLYGTGAVVSALKAVGID-TREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAG--KGASTPSQTAWALMALIAGGRAESEAA--RRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYK 625          
BLAST of DN617798 vs. ExPASy Swiss-Prot
Match: SQHC_ZYMMO (Squalene--hopene cyclase OS=Zymomonas mobilis GN=shc PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = -3
Query:  210 FTYGTWFGVKGLVAAGMNYSNSSTIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGV-FNRNCMISYSAYRNIFPIWALGEYR 620
            + YGTW  +  L  A + + + + I+KA  +L + Q   GGWGE+  S     YS  E   S    TAWA+L L+  G+A ++     +   +L  +Q E G + ++   G  F R   + Y  Y   FP+WAL  YR
Sbjct:  511 YIYGTWSALCALNVAALPHDHLA-IQKAVAWLKTIQNEDGGWGENCDSYALD-YSGYEPMDSTASQTAWALLGLMAVGEANSEAVT--KGINWLAQNQDEEGLWKEDYYSGGGFPRVFYLRYHGYSKYFPLWALARYR 644          
The following BLAST results are available for this feature:
BLAST of DN617798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ERG7_YEAST1.629e-2543.75Lanosterol synthase OS=Saccharomyces cerevisiae GN... [more]
ERG7_SCHPO3.629e-2542.65Lanosterol synthase OS=Schizosaccharomyces pombe G... [more]
ERG7_PNECA5.240e-2443.17Lanosterol synthase OS=Pneumocystis carinii GN=ERG... [more]
SQHC_RHISN2.358e-1639.13Probable squalene--hopene cyclase OS=Rhizobium sp.... [more]
SQHC_BRAJA8.959e-1638.41Squalene--hopene cyclase OS=Bradyrhizobium japonic... [more]
SQHC_ALIAD1.430e-1333.33Squalene--hopene cyclase OS=Alicyclobacillus acido... [more]
SQHC_ZYMMO5.087e-1132.61Squalene--hopene cyclase OS=Zymomonas mobilis GN=s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617798 ID=DN617798; Name=DN617798; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTGAGCTAAGAGTCTTTTCTTACCTTATTCTGCTT
TCGTTTTTGTTTTTGCTGGAAACTTTGTACATCTCATTACAGCATTGAAA
GCGATAAGGAAACAAAAAAGTTGAATGGACTAGTAGAAATTGGAAAGCAT
ATGGACGATTGTAATCGAAATGGTTAAAAAGTTTACATATGAGCCTCCAA
TACTCGACATCGGTACTCTCCAAGTGCCCAAATAGGGAAAATGTTTCTAT
ATGCAGAGTAGCTGATCATACAATTCCTATTGAAGACTCCCATAATTTCC
TCCTGTGGATAATCTCCATTCTCCATTTGCGAATTTATTAAATATCTAGC
AGCACGGTGCAAAGGTGTCGGATCTGTCTCAGCCTGTCCAGCATCAATCA
GAGCCAACATAGCCCATGCTGTATTTACCACATGAGACCTATCCCCTTCA
AGATTTGAATAAACCTTTTTTTGACATGAAAGATAACTTTCTCCCCAGCC
ACCTGAAGGACGCTGTTTTGACAGCAGAAACTCACAAGCTTTACGGATGG
TAGAAGAATTGCTGTAGTTCATTCCAGCAGCCACCAAACCTTTCACCCCA
AACCATGTACCGTAAGTGAAGC
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