DN617795

Overview
NameDN617795
Unique NameDN617795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB5 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB0057) GN=hdc PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  291 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 587
            +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  254 ISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_ACIB3 (Histidine decarboxylase OS=Acinetobacter baumannii (strain AB307-0294) GN=hdc PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  291 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 587
            +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  254 ISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBT (Histidine decarboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=hdc PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = -3
Query:  291 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 587
            +S +V+Y+++RD TI GSRNGH  + +W  +  +     +  +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  254 ISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRHRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of DN617795 vs. ExPASy Swiss-Prot
Match: DCHS_ENTAE (Histidine decarboxylase OS=Enterobacter aerogenes GN=hdc PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 37/121 (30.58%), Postives = 68/121 (56.20%), Query Frame = -3
Query:  237 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 596
            ++ +S  ++Y+++ D TI GSRNGH P+ +W  +       + + +   L  A Y  DR   AGI A+ ++ S TVVF +P  E   ++  LA  GN+AH++    ++   ++D  ++++I
Sbjct:  251 VDRISVEIDYISAHDKTISGSRNGHTPLMMWAAVRSHTDAEWHRRIGHSLNMAKYAVDRFKAAGIDALCHKNSITVVFPKP-SEWVWKKHCLATSGNVAHLITTAHHLDSSRIDALIDDVI 370          
The following BLAST results are available for this feature:
BLAST of DN617795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCHS_ACIB51.470e-1238.38Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIB31.470e-1238.38Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBT2.507e-1238.38Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ENTAE7.294e-1230.58Histidine decarboxylase OS=Enterobacter aerogenes ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617795 ID=DN617795; Name=DN617795; organism=Citrus sinensis; type=EST; length=598bp
TTTTATTAAAAACGTAACTAATATGAAACATTATAGAACCTGGAAAATGT
TGCCGATACAAATTCTGATTCCATTACAAATAAAGAATTCTGCTACAACA
AGACAACAAACTGAAACAATCCTAAGCCATAATGATTTCACTTGTGCGCA
GCACAAACACAATTCTCACTTCCTATATCTGCTGCAATGCAAGGAGGCTG
TCTTTTTCCATCCTCATACCATGTTGAGCGATTGTCTATTAACTCGTTCA
AGAAATCATCCAGCTTGTCAATTGTGACATTGGGCATCACTACTACATGT
GCAATGTTACCTTGGCAAGCAAGCTGCCACCTACGGACAAACTCTTCATC
TTGAGGACGCTCAAACACAACGGTGCTGCTAAGCTCATTCAACATGGCAC
TAATCCCAGCATCAAGAAGGCGGTCCTTCAAGTAGTGAGCATTTCTAAGA
CACTTCTGGACTTCTTTCTGGAACCCTTTGTAACCTTTTCTATTGAGGGT
GTACCAGAGGAAGATAGGAGCATGGCCATTTCGGCTTCCCATGATTGTGG
CATCTCTTGAAGCAAGGTACTCTACATTGCTTGAAAGGACATTGATGT
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