DN617791

Overview
NameDN617791
Unique NameDN617791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617791 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.435e-51
Identity = 89/146 (60.96%), Postives = 111/146 (76.03%), Query Frame = 2 
Query:  125 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVS 562
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMIS 149
The following BLAST results are available for this feature:
BLAST of DN617791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP1_XENTR2.435e-5160.96Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617791 ID=DN617791; Name=DN617791; organism=Citrus sinensis; type=EST; length=562bp
ATTCGCTTCCTATCTTGATCTTTCTTCAAAGTCTTTGTGTTGTTCTGTCT
GTGTTTTTTTCTTGTAAGAAATGGCAACTGATACTGCGGTGGCTGAACAC
CGGTCGAGCAATAATGGCCATGGTTGCTGCGCGAAAGGGCCTGGGTATGC
AACTCCACTCGATGCCATGTCTGGTCCTAGAGAGAAACTTCTCTATGTCA
CTTGTCTTTACACTGGTACTGGAAGAGAGAAGCCTGATTACCTAGCGACA
GTGGATGCGGATCCTAGCTCTTCTTCTTATTCAAAAGTTATTCATCGGCT
CCCTGTGCCATACATTGGCGATGAACTACATCATTCGGGATGGAATTCAT
GTAGCTCATGCTATGGAGATTCATCTGCTCAACGGCGTTTTCTTGTCTTG
CCTTCTTTGGTATCTGGTCGTATATACATAGTTGACACACAAAAAAATCC
AAGGGCTCCCTCTTTGCATAAAGTTGTTGAGCCTGCAGATATTGTACAGA
AGACAGGATTATCTTATCCTCACACGGCTCATTGCCTTGCTTCTGGTGAT
ATCCTGGTGTCA
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