DN617790

Overview
NameDN617790
Unique NameDN617790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36
Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = -3 
Query:  165 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTD---DGQPYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 581
            QY+I D KNP + GQV++GG   K  PV  + D   D QP     P +               L GKRLYVT SL+SAWD QFYP+L ++GS M+QIDVN++ GG+ +N NF VDF AEP+GPALAHE+RYPGGDCTSDIW+
Sbjct:  335 QYDITDRKNPRMVGQVFLGGSVLKDGPVKVLEDKELDSQP----TPRI---------------LKGKRLYVTTSLYSAWDKQFYPDLIKEGSVMMQIDVNTDTGGLKLNENFLVDFGAEPEGPALAHELRYPGGDCTSDIWL 457
[Close]
BLAST of DN617790 vs. ExPASy Swiss-Prot
Match: SBP_CAEEL (Putative selenium-binding protein OS=Caenorhabditis elegans GN=R11G10.2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.283e-15
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = -3 
Query:  240 QYNIEDPKNPVLTGQVWVGGLFQKGSPVVAVTDDGQ-------PYQSDVPSVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE 581
            +++I+DP    L G++ +GG+F     V   T +         P    +P  +G + RGGP ++QLS DG RLYV NS + AWD QFYPEL   G  M+++D+  ++  M +N  F +D +
Sbjct:  401 RFDIQDPFRVSLHGKINLGGIFDSFPEVRIKTSNAMEDRWWLPPETRSLP--RGTKFRGGPALMQLSKDGCRLYVCNSFYKAWDAQFYPELISDGGQMIRVDIVDDE--MQLNEKFLIDMK 517
The following BLAST results are available for this feature:
BLAST of DN617790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SBP1_DANRE8.917e-3654.23Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP_CAEEL2.283e-1536.36Putative selenium-binding protein OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617790 ID=DN617790; Name=DN617790; organism=Citrus sinensis; type=EST; length=583bp
AGTTTATTTACTGCATAAATCAAACCATTATCTTAAACTGGCTATTCCAG
AACCAGAACGGACACTGACTTCCACATACAAACGTAATCACCCCATCAAT
CAAAGCGGTATCCTATCTGGACATGATGGACACCGTTTATTGCCAGAATA
GATTAAGATGGTTAAATCCATATATCTGAAGTGCAATCACCACCAGGATA
CCTCATCTCATGAGCTAGGGCAGGACCATCAGGTTCAGCTTCAAAGTCCA
CAAAAAAGTTTGGATTGATAGCCATACCACCCTTCTCGGAGTTGACATCA
ATCTGTAACATGTGGGATCCTTTCTCCTTGAGTTCAGGATAAAATTGACA
ATCCCATGCACTAAAGAGCGAGTTGGTAACATAGAGCCGCTTCCCATCTA
AGCTTAACTGAATCATCTGAGGTCCCCCTCTCAAACGATGCCCCTGGACC
GATGGAACATCAGACTGATATGGCTGACCATCATCTGTTACAGCCACTAC
AGGACTTCCTTTCTGAAACAGCCCCCCGACCCAGACTTGGCCTGTCAATA
CAGGATTTTTGGGATCCTCAATGTTATACTGTC
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