DN617782

Overview
NameDN617782
Unique NameDN617782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.134e-36
Identity = 70/96 (72.92%), Postives = 87/96 (90.62%), Query Frame = -3
Query:  292 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 579
            R G L+E++ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   82 RLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.733e-35
Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = -3
Query:  292 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 579
            + G L+E++ KLDYVL L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GGGRPGRVKRR +
Sbjct:   82 KIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 1.723e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = -3
Query:  295 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 579
            R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   82 RVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.723e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = -3
Query:  295 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 579
            R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   82 RVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.117e-33
Identity = 66/96 (68.75%), Postives = 84/96 (87.50%), Query Frame = -3
Query:  298 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 585
            +H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGRPGR  R+
Sbjct:   77 LHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.612e-32
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = -3
Query:  301 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 582
            H YGFL+E ++KLDYVL+LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG GRPGRVKR
Sbjct:   80 HGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.012e-26
Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = -3
Query:  292 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGGRPGRVKRRNI 585
            M R G L+ES+ +LDY+L+L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   GG+PGR+ R+ +
Sbjct:   82 MTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.021e-24
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  295 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 468
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.976e-22
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = -3
Query:  295 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR-PGRVKRRN 585
            +H  G L   QNKL++VLAL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P       GR KR+N
Sbjct:   80 LHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  310 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 585
            ++R G LE+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSPF    P +
Sbjct:   77 LYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168          
The following BLAST results are available for this feature:
BLAST of DN617782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS9A_SCHPO9.134e-3672.9240S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9_CAEEL7.733e-3571.8840S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9B_YEAST1.723e-3473.6840S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST1.723e-3473.6840S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_DICDI1.117e-3368.7540S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_TRYBB1.612e-3269.15Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_NAEFO1.012e-2659.6040S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_TOBAC8.021e-2486.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS9_ENTHI1.976e-2255.1040S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS4_SULAC3.378e-1442.3930S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617782 ID=DN617782; Name=DN617782; organism=Citrus sinensis; type=EST; length=587bp
ACGGAGATTTAATTTAGGGTATAAAATAGCTTAAAGATCAAAGAGTACAT
CCCAAAAAACAAAAACAACTCTCTCAATGAGTAGTCTGTAAAACACAAAG
CAAGCAAAACCTCCTATTATAGCAAGAAAATTCGCAAATAAAAACATAAA
ACTTAGAGAAGATAAGTCCACTTGCAAAGTTCAGCCAGAATTCCTACTGT
AACCATAAAAAAACTATCTGTTCACACAGGTAATTTATTCTTCATCCTCT
TCATCCCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTGATGTTCCT
TCTCTTCACTCTTCCAGGGCGCCCACCTCCGAATGGACTTGTGAGTGAGA
ATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGAATGTTG
ACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGC
ATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCTGGAGAC
GACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCAAGCTTG
TTCTGGCTCTCTTCCAAGAAGCCGTACCTGTGCATCC
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