DN617782

Overview
NameDN617782
Unique NameDN617782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  331 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 585
            + R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   77 LKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  331 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 585
            ++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:   77 LNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = -3
Query:  319 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 585
            ++  G L E+   LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:   77 LNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -3
Query:  430 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 579
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ
Sbjct:   81 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  334 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            + RY  L E +  LD+VL+L +E+ LERRLQT+V+K G+AK+   AR  I   HI V  + V  PS++V V     IE+   SP
Sbjct:   77 LKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  379 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 585
            +++ GF+E+    LD +L+L V   LERRLQTLVF+ G+AKSIHHAR L+   H+ V  + V  P F+V
Sbjct:   79 LYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  334 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            + RY  L ES+  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   77 LKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 34/86 (39.53%), Postives = 59/86 (68.60%), Query Frame = -3
Query:  334 MHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585
            ++  G L++   +  LD +L LTVE+ LERRLQT+V++ G+AK+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:   77 LYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  316 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 579
            + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  379 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 585
            +++ GF+E+   +LD +L+L V   LERRLQT+V++ G+AKSIHHAR LI   H+ V  + V  P F+V
Sbjct:   79 LYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
The following BLAST results are available for this feature:
BLAST of DN617782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_PYRAB1.853e-1244.7130S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_THEON2.421e-1245.8830S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_HYPBU5.392e-1240.4530S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS9_PIG7.043e-1268.0040S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]
RS4_METM77.043e-1244.0530S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_PYRCJ9.198e-1249.2830S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]
RS4_METM59.198e-1242.8630S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METKA9.198e-1239.5330S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_SULSO1.201e-1138.6430S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_PYRAE1.201e-1147.8330S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617782 ID=DN617782; Name=DN617782; organism=Citrus sinensis; type=EST; length=587bp
ACGGAGATTTAATTTAGGGTATAAAATAGCTTAAAGATCAAAGAGTACAT
CCCAAAAAACAAAAACAACTCTCTCAATGAGTAGTCTGTAAAACACAAAG
CAAGCAAAACCTCCTATTATAGCAAGAAAATTCGCAAATAAAAACATAAA
ACTTAGAGAAGATAAGTCCACTTGCAAAGTTCAGCCAGAATTCCTACTGT
AACCATAAAAAAACTATCTGTTCACACAGGTAATTTATTCTTCATCCTCT
TCATCCCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTGATGTTCCT
TCTCTTCACTCTTCCAGGGCGCCCACCTCCGAATGGACTTGTGAGTGAGA
ATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGAATGTTG
ACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGC
ATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCTGGAGAC
GACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCAAGCTTG
TTCTGGCTCTCTTCCAAGAAGCCGTACCTGTGCATCC
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