DN617782
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.853e-12 Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = -3 Query: 331 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 585 + R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 77 LKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12 Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = -3 Query: 331 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 585 ++R G L + LD VL+LTVE+ L+RRLQT+VFK G+A++I AR LI HI V Q++ P ++V + + I +S TSPF Sbjct: 77 LNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.392e-12 Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = -3 Query: 319 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 585 ++ G L E+ LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI HI + + + P ++V+ D + ++++ TSP+ R Sbjct: 77 LNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12 Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -3 Query: 430 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 579 R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ Sbjct: 81 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = -3 Query: 334 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 + RY L E + LD+VL+L +E+ LERRLQT+V+K G+AK+ AR I HI V + V PS++V V IE+ SP Sbjct: 77 LKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12 Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = -3 Query: 379 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 585 +++ GF+E+ LD +L+L V LERRLQTLVF+ G+AKSIHHAR L+ H+ V + V P F+V Sbjct: 79 LYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12 Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = -3 Query: 334 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 + RY L ES+ LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP Sbjct: 77 LKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12 Identity = 34/86 (39.53%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 334 MHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 585 ++ G L++ + LD +L LTVE+ LERRLQT+V++ G+AK+ AR L+ RHI +G ++V +PS++V + ++ +++S SP Sbjct: 77 LYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11 Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3 Query: 316 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 579 + G L++ +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 79 KMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of DN617782 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11 Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = -3 Query: 379 MHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 585 +++ GF+E+ +LD +L+L V LERRLQT+V++ G+AKSIHHAR LI H+ V + V P F+V Sbjct: 79 LYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147 The following BLAST results are available for this feature:
BLAST of DN617782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617782 ID=DN617782; Name=DN617782; organism=Citrus sinensis; type=EST; length=587bpback to top |