DN617779

Overview
NameDN617779
Unique NameDN617779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10459 contig Csv1_Contig10459:27..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.760e-73
Identity = 133/241 (55.19%), Postives = 169/241 (70.12%), Query Frame = 1
Query:   10 VILCVGFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRT-RWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            +I    F   +SSV    GW+ AHATFY              YGNLY+ GY TNTAALSTALFN+G SCG C+QI+C     PQWCL+G SI +TATNFCPP        GGWC+PP  HFD++QP F  IA+Y+AGIVP++Y++V C+R+GG+RFTING +YF LVLI+NV G G++  V IKGS++ +W+ MSRNWG N+QSN+YLNGQSLSF V  S+G    + +V P NW FGQ++
Sbjct:   11 MIFSTMFFMKISSVSA--GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNWRFGQSF 249          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.049e-69
Identity = 125/223 (56.05%), Postives = 157/223 (70.40%), Query Frame = 1
Query:   64 GWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            G  N HATFY              YG+LYS GYGT TAALSTALFN+G SCG C++I C  A D +WCL+G S+++TATNFCPP        GGWC+PP  HFD++QP ++ I  YR GIVPV+++RV C + GG+RF ING  YF LV I NV GAG + +VSIKGS+T W  MSRNWG NWQSN+YL+GQ+LSF +TT++G + V  +V P +WSFGQ Y+
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.789e-69
Identity = 132/221 (59.73%), Postives = 148/221 (66.97%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC-ANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            W  A ATFY              YG+LY  GYGT TAALSTALFN G SCGACF I C     QWC  G SI VTATNFCPP        GGWC+PP  HFD+SQP ++ IA YRAGIVPV YRRV C+R+GGIRF +NGHSYF LVL+TNV G+G V  + IKGS T W  MSRNWG NWQSN+ L+GQ+LSF V   +G  V +  VAP  WSFG TYT
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGWSFGATYT 245          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 8.879e-69
Identity = 127/246 (51.63%), Postives = 163/246 (66.26%), Query Frame = 1
Query:   19 CVGFLSLVSSVQGYG--------GWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            C  FL+L+++   +         GW  A ATFY              YG+LYS GYGTNTAALST LFN+G SCG C++IMC    D ++C+ G S+ +TATN CPP        GGWC+PP  HFD+++P +  I  Y  GIVPV+Y+RV C + GG+RFTING  YF LVL++NV G G + +VSIKGSRT W  MSRNWG NWQSN+YL+GQSLSF VT+S+G ++    VAP  W+FGQT++
Sbjct:   10 CARFLALLATCLLWNEAASFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFS 255          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.407e-68
Identity = 121/220 (55.00%), Postives = 154/220 (70.00%), Query Frame = 1
Query:   70 INAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC-ANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            ++  ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG C+QI C  ++ +WC  G S+ +TATN CPP        GGWC+PP  HFD++QP ++ I  YR GIVPV ++RV C R GG+RFTING+SYF LVLITNV G G + +V IKG++T W  MSRNWG NWQ+N+YLN Q++SF VT++ G ++V   VAP NW FGQT+T
Sbjct:   25 LSGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFT 244          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 9.817e-68
Identity = 122/242 (50.41%), Postives = 158/242 (65.29%), Query Frame = 1
Query:    7 WVILCVGFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRGSII-VTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            + +L        +S    GGW++  ATFY              YGNLY+QGYG   AALSTALFN G SCG C+ IMC  +  P+WC  G+ + +TATN CPP        GGWC+PP  HFD+SQP ++ I  YRAGIVPV+Y++V+C R GG+RFT++G +YF LVLITNV G+G V A+S+KGS+T W P++RNWG NWQ NS L GQ+LSF VT++ G ++    V P  W FG T+T
Sbjct:    7 FAVLAAALCITSASAAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWWEFGTTFT 248          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.187e-67
Identity = 117/216 (54.17%), Postives = 145/216 (67.13%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPP------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            W +A ATFY              YG+L+ QGYG  TAALSTALFN G +CGAC+QIMC NDPQWCL GS+ +TATNFCPP      G WC+PP  HFDLS P+F  IAQY+AG+VPV YRR+ C R GG++F   G+ YF ++L  NV GAGD+  + +KG +T W  M +NWGQNW +   L GQ +SF VTTS+G +    +V P NW FGQT+
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTF 263          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 129/242 (53.31%), Postives = 158/242 (65.29%), Query Frame = 1
Query:   13 ILCVGFLSL--VSSVQGYGG--WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC-ANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            +L V FLSL   S ++G     W +A ATFY              YGN+YS GYGTNT ALS+AL+ +G SCGAC+ + C A+  +WC  G S+ VTATN+CPP        GGWC+PP  HFD+SQP ++ IA Y +GIVPV Y R  C+R GGIRF I GH Y+ LVL+TNV G+G V A  +KGS T W  MSRNWG+NWQSN+YL GQ+LSF V   +G  V +Y VAP NW FG TY
Sbjct:    5 LLVVLFLSLCCASRLRGEAAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGSTY 246          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 8.310e-67
Identity = 121/223 (54.26%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCAND--PQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSR-TRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            W  AHATFY              YG+LYSQGYGT  AALSTALFN+G SCG C++I C     PQWC  G ++ +TATNFCPP        GGWC+PP  HFD++QP ++ I  Y AGI+PVIY+RV C + GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RNWG NW S SYL GQ+LSF VT  +G ++V  ++ P  W FGQT+T
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFT 256          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 8.310e-67
Identity = 118/223 (52.91%), Postives = 151/223 (67.71%), Query Frame = 1
Query:   64 GWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRT-RWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            GW+ AHATFY              YGNLY+QGYGT TAALSTALFN+GL+CG C++++C    D  WC  G S+ +TATNFCPP        GGWC+PP  HFD++QP ++ I  YR GI+PVIY+RV C + GG+RFTINGH YF LVL+TNV  AG + A+ +KGS++  W  M+ NWG  W S +YL GQ LSF VT ++G ++V  +V  P W FGQT+
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTF 255          
The following BLAST results are available for this feature:
BLAST of DN617779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
EXP17_ARATH7.760e-7355.19Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP11_ARATH1.049e-6956.05Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA8_ORYSJ1.789e-6959.73Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ8.879e-6951.63Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ4.407e-6855.00Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ9.817e-6850.41Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ARATH2.187e-6754.17Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXPA9_ORYSJ4.872e-6753.31Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ORYSJ8.310e-6754.26Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ8.310e-6752.91Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617779 ID=DN617779; Name=DN617779; organism=Citrus sinensis; type=EST; length=701bp
GCTCTTTGGGTGATTCTTTGTGTTGGGTTTCTCTCATTGGTCTCATCCGT
TCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACTTTCTATGGAGGTG
GTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTACGGCAATTTGTAC
AGCCAAGGTTATGGTACTAATACCGCAGCACTTAGCACTGCTTTGTTCAA
CAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATGTGCGCTAATGACC
CGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGCCACTAACTTTTGC
CCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACTTTGATCTCTCTCA
GCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGTATTGTTCCTGTAA
TCTACAGAAGGGTGAGATGCAAGAGAAATGGGGGCATAAGGTTCACAATC
AATGGCCATTCTTACTTCAATTTAGTTCTAATAACAAACGTGTGAGGAGC
TGGTGACGTGCATGCTGTATCCATCAAAGGTTCAAGGACTAGATGGCAAC
CGATGTCGAGAAACTGGGGCCAAAACTGGCAAAGCAACTCGTATCTTAAT
GGACAAAGCCTCTCTTTTGTTGTGACCACAAGTAATGGCCACAGTGTTGT
TTCTTACCATGTTGCCCCTCCTAATTGGTCATTTGGGCAGACTTATACCG
G
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