DN617779

Overview
NameDN617779
Unique NameDN617779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.571e-57
Identity = 115/243 (47.33%), Postives = 151/243 (62.14%), Query Frame = 1
Query:   19 CVGFLSLVS----SVQGYGG--WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTT-SNGHSVVSYHVAPPNWSFGQTY 696
            C+  LS+++    S+  Y G  W  A ATFY              YGN+Y  GYG  T ALSTALFN G +CG CFQ+ C + P  C  GS   +VTATN CPP        GGWC+PP  HFDL++P F  IA ++AGI+PV YRRV CK+ GGIRF   G+ Y+ LV + NV G GD+  +++KGSRT W  MS NWG ++Q+ S L GQSLSF +T+ +   ++ +Y+ AP +WS G+TY
Sbjct:    9 CLVILSMMAMIGTSMATYAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.737e-56
Identity = 111/212 (52.36%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGG-WCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            W +A A +Y               YG+L   GYG  TAALSTALFN+G SCGAC++IMC+ +PQ CL GSI +TAT+ CPPG  WC  PN HFDLS P+F  IAQ +A +VPV YRRV C + GG++F + G+     +L  NV GAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S  VTTS+G +     V P +W FGQT+
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTF 256          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.869e-56
Identity = 105/214 (49.07%), Postives = 140/214 (65.42%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG C+ I+C     P WC  G +I VT TN+   GGWC+    +FD+SQP +++I  Y AGIVP++Y++V+C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G ++V     P  WSFGQT++
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY---GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.470e-55
Identity = 105/220 (47.73%), Postives = 141/220 (64.09%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            W +A A++Y              +G+L   GYG  T  LSTALF  G +CG C+++ C +D ++CL G SI+VTATNFC P        GG C+PPNHHF L    F+ IA ++AG++P+ YRRV C R+GG+RF + G S+F  VLI+NV GAGDV +V IKG+ + W  M RNWGQ W  NS   GQ LSF +T+S+G ++ +Y+V P  W FG+TYT
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYT 251          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.530e-55
Identity = 104/197 (52.79%), Postives = 131/197 (66.50%), Query Frame = 1
Query:  136 YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            YG+L    YG  TA +S ALF  G +CG C+++ C N   WCLRGS  ++VTAT+FC P        GGWC+ P  HF++S+  F  +A+ +A IVPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRT W PM RNWGQNWQ ++ L GQ LSF VT   G +VV+Y VAPP+W F QT+
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTF 253          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.773e-54
Identity = 109/224 (48.66%), Postives = 138/224 (61.61%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP----------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIK-GSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTT-SNGHSVVSYHVAPPNWSFGQTY 696
            W  AHATFY              YGNLY+ GYGT+TAALST LF +G  CG C+Q+ C      C RGS  I VTATN CPP          GGWC+PP  HFDLS+P F  +A +RAGIVPV+YRRV C R GG+RF + G+ Y+ L  + NV GAGDV  + +K G    W  MS NWG ++Q+ + L GQ+LSF VT+ + G ++++  V P +W FG TY
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.347e-53
Identity = 100/197 (50.76%), Postives = 129/197 (65.48%), Query Frame = 1
Query:  136 YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            YG+L    +   +A LS  LFN G SCGAC ++ C N  +WCL+GS  ++VTAT+FCPP        GGWC+ P  H +LS   F  IA+ RA ++P+ YRRV+C R GG+RF+++G S+F  VLI+NV   G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSF VT   G ++ SY VAPP W FG TY
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTY 249          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 89/217 (41.01%), Postives = 130/217 (59.91%), Query Frame = 1
Query:   61 GGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPN----HHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGS-RTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            G W++ HATFY               G   + GYG  TAA+S ALF+NG  CGAC+++   +        +++VTATN  PP     P N     HFDL+ P F  IA+ + G+VPV YR+V C R GGI++TI G+  +N+V++ NV GAGDV  +++KG+ R +W P+ R+WGQ W++ + L G+SL+F V T +     S+ VAP +W++  TY
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPP-----PVNGMKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.383e-37
Identity = 83/194 (42.78%), Postives = 113/194 (58.25%), Query Frame = 1
Query:  160 YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNV*GAGDVHAVSIK--GSRTRWQPMSRNWGQNWQSNSYL-NGQSLSFVVTT--SNGHSVVSYHVAPPNWSFGQTY 696
            Y T TAALST LF +G  CG C+++ C   P WC  GS  +++T TN CPP        GGWC+PP HHFD++ P F  +AQ  AGIVPV YRRV C+R GG+RF + G+ Y+ L+ + NV GAGDV ++S+K  G    W   + NWG  +Q  + L N   L+  +TT  +   +++      P W  G  Y
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCY 277          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 76/256 (29.69%), Postives = 116/256 (45.31%), Query Frame = 1
Query:    1 ALWVILCVGFLSLVSSVQGY---GGWINAHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG---GIRFTINGHSYFNLVLITNV*GAGDVHAVSI-----KGSRTRWQPMSRNWGQNWQSNSYLNGQS-----LSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            A   + C    S V+SV  +    GW    AT+Y              Y G++    + +  AA S +++ +G  CG+C+Q+ C+ +P  C    + V  T+ C PGG C     HFDLS   F  +A+         AG +PV Y RV CK  G     R     + Y+  VL+ +  G GD+ AV +      G    W  M ++WG  W+ NS   G +     +S  +T+ +G ++V+ +V P  W  G TY
Sbjct:   13 AFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC-PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTY 263          
The following BLAST results are available for this feature:
BLAST of DN617779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
EXP18_ARATH1.571e-5747.33Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP21_ARATH1.737e-5652.36Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ORYSJ3.869e-5649.07Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ1.470e-5547.73Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ9.530e-5552.79Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ2.773e-5448.66Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP20_ARATH2.347e-5350.76Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP26_ORYSJ1.427e-4241.01Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ1.383e-3742.78Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ6.894e-2129.69Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617779 ID=DN617779; Name=DN617779; organism=Citrus sinensis; type=EST; length=701bp
GCTCTTTGGGTGATTCTTTGTGTTGGGTTTCTCTCATTGGTCTCATCCGT
TCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACTTTCTATGGAGGTG
GTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTACGGCAATTTGTAC
AGCCAAGGTTATGGTACTAATACCGCAGCACTTAGCACTGCTTTGTTCAA
CAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATGTGCGCTAATGACC
CGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGCCACTAACTTTTGC
CCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACTTTGATCTCTCTCA
GCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGTATTGTTCCTGTAA
TCTACAGAAGGGTGAGATGCAAGAGAAATGGGGGCATAAGGTTCACAATC
AATGGCCATTCTTACTTCAATTTAGTTCTAATAACAAACGTGTGAGGAGC
TGGTGACGTGCATGCTGTATCCATCAAAGGTTCAAGGACTAGATGGCAAC
CGATGTCGAGAAACTGGGGCCAAAACTGGCAAAGCAACTCGTATCTTAAT
GGACAAAGCCTCTCTTTTGTTGTGACCACAAGTAATGGCCACAGTGTTGT
TTCTTACCATGTTGCCCCTCCTAATTGGTCATTTGGGCAGACTTATACCG
G
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