DN617779

Overview
NameDN617779
Unique NameDN617779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10459 contig Csv1_Contig10459:27..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.677e-16
Identity = 71/243 (29.22%), Postives = 109/243 (44.86%), Query Frame = 1
Query:   40 VSSVQGYG-GWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTINGHS---YFNLVLITNV*GAGDVHAVSIKGSRTR-------WQPMSRNWGQNWQSNSYLNGQS-LSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            VS    YG GW+ A AT+Y               G  N+    + + T+  +  +F +G  CG+C+QI C  DP  C     ++I+T  N+ P         +HFDLS   F  +A+         +GI+ + +RRV C   G  I F +   S   YF  VL+      GDV  V +  S++        W PM  +WG  W+ +S    Q+  S  + + +G ++V+ +V P NWS    Y
Sbjct:   34 VSDASAYGSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYPVA------RYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYF-AVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWRLDSNHRLQAPFSLRIRSDSGKTLVANNVIPANWSPNSNY 268          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 69/229 (30.13%), Postives = 109/229 (47.60%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIV--TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIN---GHSYFNLVLITNV*GAGDVHAVSI--KGSRTRWQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            W++A AT+Y                Y ++    + +  A  +  +F +GL CG+CF+I C + P  C    ++V  T  N+ P         +HFDL+   F  +A+        +AGI+ + +RRV+CK +  + F +    G +Y  L L+  V G GD+ AV +  KGS T ++P+  +WG  W+  S+  L G  L+  +TT  G   V   V P NW     YT
Sbjct:   50 WLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECSGKPVVVHITDMNYEPIAA------YHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIWRKDSDKPLKG-PLTVRLTTEGGTKSVYDDVIPANWKANTAYT 268          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 66/231 (28.57%), Postives = 102/231 (44.16%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLR-GSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTINGHS--YFNLVLITNV*GAGDVHAVSI-----KGSRTR-WQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            W+ A AT+Y               G  N     + + T+  +  LF +G  CGAC+QI C N+P    +  ++I+T  N+ P         +HFDLS   F  +A+         AGI+ + +RRV C   G  + F +   S   +  VL+      G V  + +      G  TR W PM R+WG  W+  +N  L G   S  + + +G +V+++ V P NW     Y
Sbjct:   31 WLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVA------RYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWRLDANHRLQG-PFSLRMVSESGQTVIAHQVIPANWRANTNY 254          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 64/231 (27.71%), Postives = 100/231 (43.29%), Query Frame = 1
Query:   61 GGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNV*GAGDVHAVSIKGS-RTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            G W+ A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+++ C   P+ C     ++ +T  N+ P         +HFDLS   F  +A+          GI+ V +RRVRCK   G +   +     N     VL+  V   GD+  + I+      W+PM  +WG  W+ ++   L G   S  +T+ +G  V++  V P NW     YT
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVYITDMNYEPIA------PYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYT 263          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 63/231 (27.27%), Postives = 100/231 (43.29%), Query Frame = 1
Query:   61 GGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNV*GAGDVHAVSIKGS-RTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            G W+ A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+++ C   P+ C     ++ +T  N+ P         +HFDLS   F  +A+          GI+ V +RRVRCK   G +   +     N     VL+  V   GD+  + I+      W+PM  +WG  W+ ++   L G   S  +T+ +G  V++  + P NW     YT
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVFITDMNYEPIA------PYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDIIPANWRPDAVYT 263          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 65/229 (28.38%), Postives = 104/229 (45.41%), Query Frame = 1
Query:   58 YGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYG--TNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTINGHS---YFNLVLITNV*GAGDVHAVSIKGSRT-------RWQPMSRNWGQNWQSNSYLNGQS-LSFVVTTSNGHSVVSYHVAPPNW 678
            +G W  A AT+Y               G  ++  Y   + T+  +  LF +G  CG+C++I C  D     R  ++I+T  N+ P   +      HFDLS   F  +A+         +GI+ + + RV C+  G  I F +  +S   YF  VL+    G GDV  V +  S+T       RW PM  +WG  W+ ++    Q+  S  +   +G ++V+ +V P NW
Sbjct:   52 WGPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDMNYYPVAPF------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLDTNHRLQAPFSIRIRNESGKTLVANNVIPANW 273          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 66/232 (28.45%), Postives = 108/232 (46.55%), Query Frame = 1
Query:   58 YGG-WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIV--TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTING--HSYFNLVLITNV*GAGDVHAVSI--KGSRTRWQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            YG  W++A AT+Y                Y ++    + +  A  +  +F +GL CG+CF+I C + P  C    ++V  T  N+ P         +HFDL+   F  +A+        +AGI+ + +RRV+CK    + F +    +  +  +L+  V G GD+ AV I  KGS T ++P+  +WG  W+  S+  + G  ++  +TT  G   V   V P  W     YT
Sbjct:   45 YGSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEPIAA------YHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDT-YEPLKHSWGAIWRKDSDKPIKG-PITVQLTTEGGTKTVYDDVIPAGWKPNTAYT 267          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 1
Query:  193 LFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDP-PNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTI-----NGHSYFNLVLITNV*GAGDVHAVSI--KGSRTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            +F +G  CG+CF++ C+  P+ C    +I+  T+        +P   +HFDLS   F  +A+        +AGI+ + +RRVRCK  G  + T      +  +YF  VL+  V G GDV  V +  KGS   W+P++ +WG  W+ ++   L G   S  VTT +   +V+  V P NW     Y
Sbjct:   85 IFKDGKGCGSCFEVKCSK-PEACSDKPVIIHITDMN-----TEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYF-AVLVKYVGGDGDVVKVELKEKGSE-EWKPLNESWGAIWRIDTPKPLKG-PFSLRVTTESDQKLVANDVIPDNWKANALY 260          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 68/236 (28.81%), Postives = 105/236 (44.49%), Query Frame = 1
Query:   64 GWINAHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPG--------GWCDPPNHHFDLSQPVFQHIA------QYR-AGIVPVIYRRVRCKRNG-GIRFTINGHSYFN--LVLITNV*GAGDVHAVSI----KGSRTRWQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            GW N  AT+Y              Y     Q  + +  AA S  ++++G  CG+C++++CA + + C    + V  T+  P G        G C     HFD+S   F  +A      Q R AG++ + Y RV C+  G G+ F ++  S  N   +L+       D+ AV I     G+   W PM ++WG  W+  S S L G   S  +T S+G   V+ +  P  W+ G  Y
Sbjct:   38 GWSNGIATWYGDPNGAGSEGGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGN-EACSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQG-PFSVRLTFSSGQMFVASNAIPAGWNPGMAY 271          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 59/221 (26.70%), Postives = 100/221 (45.25%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA-------QYRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNV*GAGDVHAVSI-KGSRTRWQPMSRNWGQNWQSNSYLNGQS-LSFVVTTSNGHSVVSYHVAPPNW 678
            W+ A AT+Y               G  N+    Y    +  +  +F +G  CG+C+++ C   P  C +   ++ +T  N+ P   +      HFD S   F  +A         +AGI+ + +RRVRCK  GG + T +     +  +  VL+  V   GDV  + + +     W+PM  +WG  W+ ++    ++  S  VTT +G S+++  V P NW
Sbjct:   43 WLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPISAY------HFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKAPFSIRVTTESGKSLIAKDVIPVNW 256          
The following BLAST results are available for this feature:
BLAST of DN617779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
EXPB6_ORYSJ6.677e-1629.22Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_MAIZE1.139e-1530.13Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXPB2_ORYSJ5.652e-1528.57Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_MAIZE7.382e-1527.71Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXPB9_MAIZE9.642e-1527.27Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXPB4_ORYSJ1.259e-1428.38Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB11_MAIZE2.148e-1428.45Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXB10_ORYSJ3.664e-1432.43Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB12_ORYSJ8.162e-1428.81Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB9_ORYSJ1.066e-1326.70Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617779 ID=DN617779; Name=DN617779; organism=Citrus sinensis; type=EST; length=701bp
GCTCTTTGGGTGATTCTTTGTGTTGGGTTTCTCTCATTGGTCTCATCCGT
TCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACTTTCTATGGAGGTG
GTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTACGGCAATTTGTAC
AGCCAAGGTTATGGTACTAATACCGCAGCACTTAGCACTGCTTTGTTCAA
CAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATGTGCGCTAATGACC
CGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGCCACTAACTTTTGC
CCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACTTTGATCTCTCTCA
GCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGTATTGTTCCTGTAA
TCTACAGAAGGGTGAGATGCAAGAGAAATGGGGGCATAAGGTTCACAATC
AATGGCCATTCTTACTTCAATTTAGTTCTAATAACAAACGTGTGAGGAGC
TGGTGACGTGCATGCTGTATCCATCAAAGGTTCAAGGACTAGATGGCAAC
CGATGTCGAGAAACTGGGGCCAAAACTGGCAAAGCAACTCGTATCTTAAT
GGACAAAGCCTCTCTTTTGTTGTGACCACAAGTAATGGCCACAGTGTTGT
TTCTTACCATGTTGCCCCTCCTAATTGGTCATTTGGGCAGACTTATACCG
G
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