DN617779

Overview
NameDN617779
Unique NameDN617779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 65/223 (29.15%), Postives = 99/223 (44.39%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTINGHS---YFNLVLITNV*GAGDVHAVSIKGSRTR-WQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWS 681
            W  A AT+Y               G  N     + + T+  +  +F +G  CG+C+QI C N P  C     ++I+T  N+ P         +HFDLS   F  +A+         AGI+ + ++RV C   G  + F +   S   YF  VL+    G GDV  V +  + ++ W PM  +WG  W+  SN  L     S  +T  +G  +V+  V P NW+
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSNPVYF-AVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWRLDSNHRLTA-PFSLRITNESGKQLVASQVIPANWA 255          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 61/204 (29.90%), Postives = 90/204 (44.12%), Query Frame = 1
Query:  157 GYGTNTA---------ALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGG---IRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSL--SFVVTTSNGHS---VVSYHVAPPNWSFGQTY 696
            GYG+  A         A   +LFNNG  CG C+Q++C   P  C    I VT T+ C PGG C     H DLS      +A+         AG++ V Y+R  C   G     R     + Y+   ++    G GD+  V I+ +   +  M       W+ NS   G +L   F +  ++G S   +V+Y+V P NW   ++Y
Sbjct:   55 GYGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPA-CSGSPITVTITDEC-PGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGGSFISMQEMRSAVWKVNS---GSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESY 253          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 61/230 (26.52%), Postives = 97/230 (42.17%), Query Frame = 1
Query:   46 SVQGYGGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG---GIRFTINGHSYFNLVLITNV*GAGDVHAVSIKGSRT---RWQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWS 681
            ++ G   W NA AT+Y               G   +    +   T+  +  L+  G  CG+C+++ C  +P       ++ +T  N+ P         +HFDLS   F  +A+        RAGI+ V + RV C+  G   G          +  VL+    G GDV  V +K +     RW PM  +WG  W+  SN  L     S  + + +G ++V+  V P NW+
Sbjct:   41 AIGGAAAWGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPACSGNAQTVAITDMNYFPLS------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRA-PFSIRIRSDSGKTLVAPDVIPLNWT 263          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 63/232 (27.16%), Postives = 100/232 (43.10%), Query Frame = 1
Query:   58 YGG-WINAHATFYXXXXXXXXXXXXXX---YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNV*GAGDVHAVSIK-GSRTRWQPMSRNWGQNWQ--SNSYLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            YG  W+ A ATFY                 Y ++    +   TA  +  +F +GL C AC++I C  +P  C    ++V  T+      +     +HFDLS   F  +A+        +AG + + +RRV+CK   G + T +     + ++  +L+    G G++ AV IK      + PM  +WG  W+      L G   S  +T+  G  +V   V P NW     YT
Sbjct:   14 YGSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVECSGEPVLVKITD----KNYEHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIVAVDIKPRDSDEFIPMKSSWGAIWRIDPKKPLKG-PFSIRLTSEGGAHLVQDDVIPANWKPDTVYT 239          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 54/185 (29.19%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  193 LFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPP--NHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIN----GHSYFNLVLITNV*GAGDVHAVSI--KGSRTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTY 696
            +F +G  CG+CF+I C+  P+ C     ++  T+        D P   +HFDLS   F  +A+        +AGI+   +RRV+CK     + T +     +  +  +L+  V G GDV  V I  KGS   W+ +  +WG  W+ ++   L G   S  VTT  G  +++    P  W     Y
Sbjct:   85 IFKDGKGCGSCFEIKCSK-PEACSDKPALIHVTDM------NDEPIAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVVEVEIKEKGSE-EWKALKESWGAIWRIDTPKPLKG-PFSVRVTTEGGEKIIAEDAIPDGWKADSVY 260          
BLAST of DN617779 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 61/228 (26.75%), Postives = 98/228 (42.98%), Query Frame = 1
Query:   67 WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDP-PNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTINGHSYFN----LVLITNV*GAGDVHAVSIK-GSRTRWQPMSRNWGQNWQSNS--YLNGQSLSFVVTTSNGHSVVSYHVAPPNWSFGQTYT 699
            W++A +T+Y                Y N+    +   T   +T +F +G  CG+CF+I C   P+ C   ++ VT T+        +P   +HFDLS   F  +A+         AG + + +RRV+CK     + T +     N     +L+  V G GDV AV IK   + +W  +  +WG  W+ ++   L G   +   TT  G       V P  W    +Y+
Sbjct:   41 WLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKCTK-PESCSGEAVTVTITDDNE-----EPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVWRIDTPDKLTG-PFTVRYTTEGGTKSEFEDVIPEGWKADTSYS 261          
The following BLAST results are available for this feature:
BLAST of DN617779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
EXPB3_ORYSJ1.066e-1329.15Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB4_ARATH4.051e-1329.90Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
EXPB8_ORYSJ1.539e-1226.52Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAC1_CYNDA3.429e-1227.16Major pollen allergen Cyn d 1 OS=Cynodon dactylon ... [more]
EXPB1_ORYSJ2.223e-1129.19Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAL1_LOLPR8.446e-1126.75Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617779 ID=DN617779; Name=DN617779; organism=Citrus sinensis; type=EST; length=701bp
GCTCTTTGGGTGATTCTTTGTGTTGGGTTTCTCTCATTGGTCTCATCCGT
TCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACTTTCTATGGAGGTG
GTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTACGGCAATTTGTAC
AGCCAAGGTTATGGTACTAATACCGCAGCACTTAGCACTGCTTTGTTCAA
CAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATGTGCGCTAATGACC
CGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGCCACTAACTTTTGC
CCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACTTTGATCTCTCTCA
GCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGTATTGTTCCTGTAA
TCTACAGAAGGGTGAGATGCAAGAGAAATGGGGGCATAAGGTTCACAATC
AATGGCCATTCTTACTTCAATTTAGTTCTAATAACAAACGTGTGAGGAGC
TGGTGACGTGCATGCTGTATCCATCAAAGGTTCAAGGACTAGATGGCAAC
CGATGTCGAGAAACTGGGGCCAAAACTGGCAAAGCAACTCGTATCTTAAT
GGACAAAGCCTCTCTTTTGTTGTGACCACAAGTAATGGCCACAGTGTTGT
TTCTTACCATGTTGCCCCTCCTAATTGGTCATTTGGGCAGACTTATACCG
G
back to top